Mycolicibacterium sediminis: MSEDJ_58540
Help
Entry
MSEDJ_58540 CDS
T07629
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSEDJ_58540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msei03400
]
MSEDJ_58540
Enzymes [BR:
msei01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MSEDJ_58540
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MSEDJ_58540
DNA repair and recombination proteins [BR:
msei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MSEDJ_58540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
zf-TFIIB
Ribosomal_S13
NFACT_N
Rv2175c_wHTH
BpsA_C
Motif
Other DBs
NCBI-ProteinID:
BBY31758
UniProt:
A0A7I7QZI8
LinkDB
All DBs
Position
complement(6086294..6087157)
Genome browser
AA seq
287 aa
AA seq
DB search
MPELPEVEALADHLRRHAVGLTVGRVDVAALSVLKTFDPPVAALHGREVTGANRWAKYLG
LELGDLHLITHLSRAGWLRWSDKLSAAPLKPGKGPIALRVHLGTPGEAPGFDLTEAGTQK
RLAVWLVDDPTKVPGIAVLGPDALTLDLDGLAAALKGNAGRIKTVITDQKVIAGIGNAYS
DEILHVARLSPFASANKLTEAQLDALHAAMVTVLTDAVTRSVGQQAATLKGEKRSGMRVH
ARTGLPCPVCGDTVREVSFADKSFQYCATCQTGGRVLADRRMSKLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccccgaggttgaggcgctcgccgaccacctgcggcgccacgcggtcggc
ctgaccgtgggaagggtcgacgtggccgcgctgtcggtcctcaagacgttcgacccgccc
gtcgccgcgctgcacggccgcgaggtcaccggcgccaaccggtgggccaagtacctcggc
ttggaactcggcgacctgcacctcattacccacctctcgcgggccggctggctgcgctgg
tcggacaagctctcggccgcaccgctcaagcccggcaaggggcccatcgcgctgcgcgta
cacctcggaacacccggcgaggcacccggattcgacctcaccgaggccggcacgcagaag
cggctggcggtgtggctggtcgacgatccgaccaaggtgcccggcatcgccgtactcggg
cccgacgccctcacccttgacctcgacggcctcgcggccgcgctgaagggcaacgccggt
cggatcaagaccgtgatcaccgaccagaaggtcatcgcggggatcggcaacgcctacagc
gacgagatcctgcacgtggcgcgactctcgccgttcgcgagcgccaacaagctcaccgag
gcgcaactcgacgcgctgcacgcggcgatggtcacggtgctgaccgacgcggtgacccgc
tcggtcgggcagcaagccgccacgctgaagggcgagaagcggtccggcatgcgcgtccac
gcgcgcaccggcctgccctgcccggtgtgcggtgacaccgtgcgcgaggtgtcgttcgcc
gacaagtccttccagtactgcgcgacgtgtcagaccggcggccgggtgctcgccgaccgg
cggatgtcgaaactgctcaagtag
DBGET
integrated database retrieval system
