Metabacillus sediminilitoris: GMB29_00690
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Entry
GMB29_00690 CDS
T07731
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msem
Metabacillus sediminilitoris
Pathway
msem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GMB29_00690 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msem03021
]
GMB29_00690 (rpoC)
03400 DNA repair and recombination proteins [BR:
msem03400
]
GMB29_00690 (rpoC)
Enzymes [BR:
msem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GMB29_00690 (rpoC)
Transcription machinery [BR:
msem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GMB29_00690 (rpoC)
DNA repair and recombination proteins [BR:
msem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GMB29_00690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QGQ43986
LinkDB
All DBs
Position
135175..138774
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMSIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVTTDTGDTPLEKKQLLSEKEFRAYREKYGNTFQASMGAEAIKKLLS
DIDLDKEVDALKEELKTAQGQRRTRAIKRLEVLEAFRHSGNHPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGSIGEGMIFKDTDEALLAYQNGYVHLHTRVAVH
AGALNKQTFTEEQNKMLLITTVGKLIFNEILPESFPYMNEPTKQNIEEKIPEKYFVQPSV
NVKEHIAAQEEIAPFKKGILGQIIAEIFKKFHITETSKMLDRMKNLGFRYSTKAGITVGV
SDIIVLKEKQEIISEGQTKVDNVLKQFRRGLITEDERYERVISIWSAAKDTIQGKLMASL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRDDDCGTDRGILAKAIKEGTEVIEKLD
ERLIGRYCRKAVKHPETGEILVNENELITEDIAVEIIEAGIDQVWIRSAFTCNTRHGVCK
KCYGRNLATGSEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAIISEISGVVAEINEVRDKQQEIVIQGDVESRSYTAPYNARLKVTQGDKIES
GQVLTEGSIDPKELLKVKDLQAVQQYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
MDAGDTDVLPGTLLDVHQFTDANKQVLLDGKRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPRYRQAEPISKVEQTEEVVSVD
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgtaaataattttgaatatatgagcatcggattggcttcaccagacaagatt
cgttcttggtctttcggtgaagttaagaagccagaaacaattaactatcgtacattaaaa
ccagaaaaagatggtcttttctgtgaacgtatatttggaccgacaaaagactgggaatgt
cattgtggtaaatataaacgcgtacgttataaaggtgtcgtttgtgatcgttgcggagtt
gaggttacacgtgcaaaagtacgacgagagcgaatggggcatattgagttagcagcaccg
gtctctcatatttggtattttaaaggaattcctagccgtatgggacttgtccttgatatg
tcacctcgtgcattagaagaagtaatctattttgcttcttatgtaacaactgatacaggt
gatacgccattagagaaaaaacagctattatctgagaaagaattccgtgcataccgtgaa
aaatacggtaatacattccaagcatcaatgggtgctgaggcgattaaaaaactattatct
gatatcgatcttgataaagaagtagatgctttaaaagaagaactaaaaacggctcaagga
caacgtagaacacgagctattaaacgtttagaagttcttgaagcattccgccattctggc
aaccatccatcatggatgattcttgatgtgcttccagttatcccgcctgagcttcgtccg
atggttcagcttgatggtggtcgctttgctacatcagatttgaatgacctatacagacgt
gtgatcaatcgtaataatcgcttaaagcgtttattagatttaggtgctccaagcatcatt
gttcaaaacgagaagcgtatgctgcaagaagcagtggatgcattaatcgataatggccgt
cgtggccgtcctgttactggtccgggtaaccgtccgttaaaatcactttcacatatgtta
aaagggaaacaaggacgtttccgccaaaacctattaggaaaacgtgttgactactctggc
cgttccgttatcgtagtcggaccaaacctaaaaatgtaccaatgtggtttacctaaagaa
atggcccttgaattattcaaaccttttgttatgaaagagttagtagaaaaagggttagct
cataacataaaaagtgcaaaacgtaaaatagaaagagtacaaccagaagtatgggatgtt
ttagaatcagttattaaagaacatccagtattacttaaccgtgccccgactctgcataga
ttaggaattcaagctttcgaacctactttagttgaaggacgtgcaattcgtctgcatcca
cttgtatgtactgcttataacgcagactttgatggagaccaaatggctgttcacgttcca
ttatcagctgaagcacaagccgaagcacgtattctaatgcttgcagcacaaaacattctt
aatcctaaggatggtaagcctgttgtaacaccttcccaggatatggttttaggtaactat
taccttacactagaacgcgcgggttcaattggtgaaggtatgattttcaaagatacagat
gaagcgttacttgcatatcaaaacggttatgtgcatttacatactcgtgttgctgtacat
gcaggcgcattaaataaacaaacatttactgaagaacaaaataaaatgttgttaataaca
acagtgggtaaattgattttcaatgaaattttaccggaatcattcccgtatatgaatgaa
ccaactaaacaaaatattgaagaaaaaatacctgaaaagtattttgttcaaccatctgta
aatgtgaaggagcatattgctgctcaagaagaaattgctccatttaaaaagggtattcta
ggacagattattgcggagatcttcaagaagttccacataactgagacttctaaaatgcta
gatcgaatgaaaaatcttggatttagatactcaactaaagcaggtattactgttggtgta
tctgacattatcgtattaaaagaaaagcaagagattatcagcgaaggtcaaactaaagtt
gataacgtattaaagcaatttagaagaggtttgattactgaggatgagcgctatgagcgt
gttatatcgatctggagtgcggcaaaagatacaattcaaggaaaattgatggcatctctt
gataaacgcaacccaatctttatgatgagtgactctggagcccgtggtaatgcatctaac
tttacgcaacttgctggtatgcgtggtcttatggccaacccggcaggacgtattatcgaa
ttaccgatcaaatcaagtttccgtgaaggtttaacagtattagagtacttcatctctaca
catggtgctcgtaaaggtcttgccgatactgccttaaagacggctgactcaggttactta
acacgtcgacttgttgatgttgcacaagatgttattattcgtgatgacgattgtggaaca
gatcgaggtattctagcaaaagcaattaaagaaggtacagaagtaattgaaaagctagat
gaacgtttaatcggaagatactgccgaaaagctgtgaagcatcctgaaacgggtgagata
cttgtaaatgaaaacgagttaataactgaagatattgctgttgaaataatcgaagctggt
attgatcaggtatggattcgttctgcgtttacatgtaacactagacatggtgtttgtaaa
aaatgctatggccgaaaccttgctacaggtagtgaagttgaagttggtgaagctgttgga
attatcgctgcacaatcaatcggtgaacctggtacacagttaacaatgcgtaccttccat
acaggtggggttgccggagatgatattacacaaggtttaccgcgtattcaagagttattt
gaggctagaaaccctaaaggtcaagcaattatttctgagatcagtggtgttgtagctgaa
attaatgaagtacgtgacaaacagcaagaaatcgtcattcaaggtgatgttgaatcacgt
tcttacacagcgccatacaatgcgcgtttaaaggttactcaaggtgataaaatcgagagt
ggccaagttttaaccgaggggtcaatagatcctaaagaattactgaaagttaaagattta
caagcagtacaacaatatctcttacgtgaagttcaaaaagtataccgtatgcaaggggta
gaaattggagataagcacgtagaggtaatggtacgacaaatgctacgtaaagtaagagta
atggatgctggtgacactgatgtattaccaggtacacttcttgatgtccatcaatttaca
gatgccaacaagcaagtgttattagatggcaaacgtccagcaacaggtcgtccagtctta
cttggtattacgaaagcatctcttgaaactgattccttcttatctgcagcatcattccaa
gaaacaactcgtgttcttaccgatgcagcaattaaaggaaaacgtgacgaattattaggt
cttaaagagaatgtaattattggtaaacttgtaccggctggtactggaatgccaagatat
cgtcaagctgagccaatttcaaaggttgaacaaacggaagaagttgtttcagtagactaa
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