Metabacillus sediminilitoris: GMB29_01180
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Entry
GMB29_01180 CDS
T07731
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msem
Metabacillus sediminilitoris
Pathway
msem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMB29_01180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msem03019
]
GMB29_01180
03009 Ribosome biogenesis [BR:
msem03009
]
GMB29_01180
Enzymes [BR:
msem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GMB29_01180
Messenger RNA biogenesis [BR:
msem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GMB29_01180
Ribosome biogenesis [BR:
msem03009
]
Prokaryotic type
rRNA helicases
GMB29_01180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
DD_DDX21-DDX50
AAA_19
NAT10_TcmA_helicase
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QGQ44067
LinkDB
All DBs
Position
214626..216131
Genome browser
AA seq
501 aa
AA seq
DB search
MNTLTLTFQELGLSSSLMQSVSKMGFEEPSPIQAQTIPLALQNKDVIGQAQTGTGKTAAF
GIPLIEKIDVKNEGIQAVVVAPTRELAIQVSEELYKIGYHKRSRVLPIYGGQDINRQIRS
LKKNPHIIVGTPGRLLDHINRKTIRLNTVHTMVLDEADEMLNMGFIEDIESILSNVPPER
QTLLFSATMPDPIRRIAEKFMQNPELVKVKAKEMTVPNITQYYLETQERKKFDILTRLLD
IQSPELAIVFGRTKRRVDELSEALTLRGYTAEGIHGDLTQAKRMSTLRKFKEGAIEVLVA
TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFVTPREMDIVKNIE
RTTKRKMDRMKPPTVDEAIESQQQMTVEKIRSIVESDNLAFYKRTAEELLEEFDAQVVVA
AALKFMTKEPSAVEVKLTDEAPAFSKSKNKGRSSSNRRRGDYNRSGSGGSGAKKNNNRAY
GDRDRSKGSRDNNKRRYSNSK
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaatacattgacattaacgtttcaagaattaggtttaagttcgtcactaatgcaatca
gtaagtaaaatgggttttgaggaaccatctccaatccaagcacaaacgattccattagct
ttacagaacaaagatgtaattggtcaagcacaaacaggaacaggaaaaacagctgcattt
ggtatccctcttattgaaaaaattgacgtgaaaaatgaaggcatccaagcggttgttgtt
gctccgactcgtgaacttgctattcaagtatctgaagaactatacaaaatcggttaccat
aaacgttctcgtgttcttccgatttatggtggtcaagatattaatagacaaattcgttca
ctgaaaaaaaatccacatattattgttgggacacctggccgattattggatcatatcaac
cgtaaaacaatccgtttaaacactgttcatacaatggtattggatgaagcagatgaaatg
ttaaacatgggctttattgaagatattgaatcaattctttctaatgtgccgccagaacgc
caaactcttcttttctctgcaacaatgccagatccaattcgtcgcattgcagagaaattc
atgcaaaatcctgagttagttaaagttaaggcgaaggaaatgactgtgcctaacattact
cagtactacttagaaactcaggaaagaaagaaatttgacatcctgacaagattacttgat
atccaatctcctgagcttgctattgtttttggtcgtacaaaacgtcgtgttgacgagttg
tctgaggcattaacattaagaggttatacagcagaagggattcatggtgatttaacacaa
gcgaaacgtatgtctactttacgtaaatttaaagaaggcgcaattgaagtattagttgca
acagatgttgctgctcgtgggttagatatttcaggtgttactcacgtgtacaactttgac
gttccgcaggatccggaaagttatgttcaccgtatcggacgtactggacgtgctggtaaa
actggtatggcgatgacatttgttacaccaagagaaatggatatcgtgaaaaacattgag
cgtacaacaaaacgtaaaatggatcgcatgaagccgccaacagttgatgaagcaattgaa
agtcaacaacaaatgactgttgaaaagattcgttcgattgttgaaagtgataaccttgct
ttctataagcgtactgctgaagagcttcttgaagaatttgatgcacaagtagttgtagct
gctgctcttaaattcatgacaaaagagcctagcgctgtagaagtcaagttaacagatgaa
gcacctgcattctctaagtctaaaaacaaaggtcgttcttctagcaacagaagaagagga
gactataatcgtagtggaagtggcggatcaggagctaagaaaaacaacaaccgcgcatac
ggagatcgtgacagaagtaaaggaagcagagataacaataaacgtcgttactcaaattct
aaataa
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