Metabacillus sediminilitoris: GMB29_01910
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Entry
GMB29_01910 CDS
T07731
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
msem
Metabacillus sediminilitoris
Brite
KEGG Orthology (KO) [BR:
msem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msem03009
]
GMB29_01910 (rlmD)
Enzymes [BR:
msem01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GMB29_01910 (rlmD)
Ribosome biogenesis [BR:
msem03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GMB29_01910 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
PrmA
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
UPF0020
RrnaAD
Methyltransf_23
Methyltransf_12
Methyltransf_32
Ubie_methyltran
PCMT
TPMT
N6_N4_Mtase
Methyltransf_4
DnaGprimase_HBD
Motif
Other DBs
NCBI-ProteinID:
QGQ44162
LinkDB
All DBs
Position
354996..356375
Genome browser
AA seq
459 aa
AA seq
DB search
MSKIQAPVIKNEYYDVTFEDLTHEGAGVAKIEGFPVFVENALPDERGKIKIIKVKKGFAF
GRLIELYEESKNRTEAPCPIYSQCGGCQLQHLSYEGQLLFKKKQVEQVLTRIGKLDLHKV
KVHPTIGMNEPWNYRNKAQVPIGEREGGLVAGFYQKRSHDIIDMERCLIQQAENDDVVQA
VKKICEKYGIRAYNEEKHKGCLRHIMVRYGLVTKEMMVVFVTKTADFQQKNEIINEITAK
FPQVKSIVQNINNKRTNVIFGNDTNVLWGEEYIYDKIGDVKFAISARSFYQVNPEQTKVL
YDKALEYAGLTGTESVIDAYCGIGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAELNGFT
NAEFAVGEAEVVIPAWYNKGNKADVIVVDPPRKGCDEALLKTILDMKPKRVVYVSCNPGT
LARDLHFLEQGGYETVEVQPVDMFPHTTHCEAVAWLELV
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattcaagcaccagtaataaaaaatgaatattatgatgtgacctttgaggac
ttaacccatgaaggtgcaggtgttgcgaaaatagaagggtttcctgtttttgtagaaaat
gcgctgccagacgaacgtgggaaaataaaaattatcaaggtgaaaaaaggctttgcgttt
ggacgcctaattgaactatatgaagaaagtaaaaatcgcaccgaagcaccttgcccaatc
tattcacaatgtggcggctgccagcttcaacatcttagctatgaaggtcagctgcttttt
aagaaaaagcaagttgagcaagttcttactagaattggaaaattagatttacacaaagtc
aaggttcatcctaccattggtatgaacgaaccttggaactaccgaaacaaagcccaagta
cctatcggagaacgtgaaggcggattagttgcaggattttaccaaaagcggagccacgat
attatagatatggaaagatgtttgattcagcaagctgaaaatgatgatgtggtacaagct
gtaaagaaaatatgcgagaaatatgggattcgtgcttacaatgaagaaaagcacaaaggc
tgtctccgtcatattatggtacgctatggccttgttacgaaggaaatgatggttgtgttt
gtaacaaaaacagcagacttccaacaaaagaatgaaattattaacgaaatcacagcaaaa
tttccgcaagtgaaatcaattgttcaaaacattaataataagcgtacaaacgtcattttc
ggcaatgatacaaatgtcctttggggcgaagaatatatttatgacaaaatcggcgatgtt
aagtttgctatctctgcacgatccttctatcaagtaaaccctgagcaaacaaaggtatta
tatgataaggcattagagtatgcagggcttacaggaactgaatcagttattgatgcctat
tgcggtattggcacaatctcattattccttgctcaaaaagcaaaaaaagtatttggagtc
gaaatcgtaccggaagcgatagaagacgcaaagagaaatgcagaacttaatggatttaca
aatgcagaatttgctgttggtgaagccgaggttgtcattcctgcatggtataacaaaggg
aataaagcagatgtcatcgttgttgatccgccgcgaaagggctgtgatgaagcattgctt
aagacgattttggatatgaagcctaagcgtgtggtatatgtgtcttgtaatcctgggacc
ttggcgcgtgatcttcattttcttgagcagggtgggtatgagactgtagaagtgcagccg
gtggatatgtttccgcatacgacgcattgtgaagcggtcgcgtggttggagttggtataa
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