Metabacillus sediminilitoris: GMB29_17130
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Entry
GMB29_17130 CDS
T07731
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msem
Metabacillus sediminilitoris
Pathway
msem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMB29_17130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msem03019
]
GMB29_17130
Messenger RNA biogenesis [BR:
msem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GMB29_17130
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4860
Motif
Other DBs
NCBI-ProteinID:
QGQ46802
LinkDB
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Position
complement(3581720..3583381)
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AA seq
553 aa
AA seq
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MEKTENIKLIALGGVGEVGKNMFVIEINSDIFIVDAGLMYPEGEMLGIDMVIPDITYLKE
NKERVKGIFLTHGHDENIGGVFYLLHNINVPIYGTKLTLALVGEKLKDNRMKQSILVKEI
DNQTVLSFESTEVTFFKTNHSIPDSVGISFRTTMGSIVHTGDFKFDQSPYGESQMDLGKI
AKIGEEGVLCLLSDSVNAEKPGYSGSEAIVGDEIADVMYNAEGRIIVAVFASNLVRIQQV
INAAVKNNRKLAIVGKNMRNLLNLASSLGYIHIEEDLLLSVNEIEKYPKHEVAILTTSNH
GDPLAVLSRMAKQSHKIVNVREGDTVLVAATPIPGHELVFSKTIDLLFRAGAHVVFGQRQ
IHVSGHGHQEELKLMLNLTKPKYFIPVHGEYKMQKAHARLAGQVGIEEKNIFLIEKGDVI
EFKGNNVHSGAKVPSGNVLIDGLGIGDVGNIVLRDRRLLSQDGILIVVVTLDKQRKKIIS
GPEIITRGFVYVRESEELITKATEIVADIVDRSMQEYNIEWSALKLSMREALNQYLYEKT
KRRPMILPIIMEI
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagacagaaaatataaagttaatagcattgggtggcgtaggtgaagtcggaaaa
aatatgtttgtaatagaaattaactctgatatctttattgtggatgcggggttaatgtat
cccgaaggtgaaatgctaggaattgatatggtcatacctgatatcacatatttaaaagag
aataaagaacgtgtaaaaggaatttttctaactcatggacatgatgaaaatatcggtgga
gttttttaccttctacataatataaatgttcctatttatgggacaaagcttacattggct
ttagttggtgaaaaactgaaagacaatagaatgaagcaatccattttagtaaaagaaatt
gataatcaaactgttttatcatttgaaagtacagaagtaactttctttaaaacaaatcac
agtattccagattcagtaggcattagttttcgtacaacaatgggatcaattgttcatact
ggagactttaaatttgaccaatccccatatggtgaaagtcaaatggatctcggcaagatt
gctaaaattggtgaggaaggcgttttatgtttgttatccgacagtgttaatgcagaaaag
cctggatattctggttctgaagcaattgttggtgatgaaattgctgatgttatgtataat
gctgaaggaagaatcattgttgcggtatttgcatcaaaccttgttcgcattcaacaagtc
ataaatgcagctgtaaaaaacaaccgcaagttggcgattgttgggaagaatatgaggaat
ctgcttaatttagccagtagtcttggatatatccatattgaagaagatttgcttctttca
gtaaatgaaatagaaaagtatccaaaacatgaagtggccattctaacaacaagtaatcat
ggtgatcctcttgctgttttatcaagaatggcaaaacaatcacataaaatagtgaatgtt
agggaaggtgatacggtccttgttgctgcaacaccaatcccaggtcatgagcttgttttt
tctaaaacaattgatttattatttagagcaggtgcacatgttgtatttggccaaaggcaa
attcatgtttcaggccatgggcatcaagaagagctcaaactgatgcttaatttaactaaa
ccaaaatattttattccagttcatggggaatataaaatgcagaaggcccatgctagatta
gctggacaagtaggtatagaagaaaaaaatatattcctgattgaaaaaggcgatgtaatt
gaatttaaaggaaacaatgtacattcaggagcaaaagttccttcaggtaatgttctaatt
gatggcttaggcattggtgatgttggaaatattgttcttcgtgatcgtcgtttgctatcg
caagacggtatattaattgtagttgtcactcttgataaacaaagaaaaaaaataatttcc
gggccagagatcattacaagaggcttcgtatatgtaagagaatctgaagagctaattacg
aaagcaactgagattgtagctgatatcgttgatcgaagcatgcaggaatataatatcgaa
tggtcagcattaaaattaagtatgagagaagcactcaatcaatatctatatgaaaagacg
aaaagaaggccgatgattttgcctattattatggaaatatga
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