Metabacillus sediminilitoris: GMB29_17230
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Entry
GMB29_17230 CDS
T07731
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
msem
Metabacillus sediminilitoris
Pathway
msem03030
DNA replication
msem03430
Mismatch repair
msem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GMB29_17230
03430 Mismatch repair
GMB29_17230
03440 Homologous recombination
GMB29_17230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msem03032
]
GMB29_17230
03400 DNA repair and recombination proteins [BR:
msem03400
]
GMB29_17230
Enzymes [BR:
msem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GMB29_17230
DNA replication proteins [BR:
msem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GMB29_17230
DNA repair and recombination proteins [BR:
msem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GMB29_17230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
DEDDh_C
HHH_3
DUF1409
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QGQ46822
LinkDB
All DBs
Position
complement(3602130..3606440)
Genome browser
AA seq
1436 aa
AA seq
DB search
MEKVNQIERFQLLLQQINLTEDAAVVHFKNGSIAKLTVHKHTKNWHFHFQFEKILPFDVY
QLFQAKLVKSFSHIADITFSIETKDPVFDEKLVQDYWSICIQQMDGISPPMLALLNEQKP
TLQGIKVIVKTKNDTEAMTIKKKYAHLIQESFQELGFPTFQMDTTVAVTKEEIQRFQEQK
LQEDKEKGLKALTDMMNAEKEESTKPEFTGPLTIGYTIKNDEEIRTLASIEDEERRVAIQ
GYVFDAETKELRSGRTLLTFKITDYTSSILVKMFARDKEDAVLVQAVKKGMWLKVRGSIQ
NDTFVRDLVMIANDINEVNAQERQDLSPENEKRVELHLHSPMSQMDAVTSVSKYIEQAKK
WGHKAIALTDHAVAQSFPEAYSAGKKNGVKILYGVEINLVNDGVPIAYNDDNRYLPDETY
VVFDVETTGLSAVYDTIIELAAVKVRGGEIIDRFESFANPHHPLSAITIDLTGITDDMVK
DAPNVDEVLRDFKEWIGNDILVAHNASFDMGFLNVGYKKLLGEEKAKNPVIDTLELGRFL
YPELKNHRLNTLCKRFDIELTQHHRAIYDAEATGYLLIKMLKDAAEKGIENHNQFNDNMG
KGNAYQRSRPYHATILAQNETGLKNLFKLVSISHMNYFYRVPRIPRSLLNKYREGLIVGS
ACDKGEVFEGMMQKSPEEVEEIAAYYDYLEVHPLEVYNHLIDLDYIKDETALKEIVSNIV
NLGEKLEKPVVATGNVHYLNPVDKIYRKILISSQGGANPLNRHTLPNVHFRTTDEMMSCF
SFLGKDKAKEIVIENTNKIADMIDEIKPIKDDLYTPKIEGADEEIRAMSYSRARSIYGEN
LPELVEARLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSFVATMTEIT
EVNPLPPHYVCPECQHSEFFNDGSVGSGFDLPNKECPNCGAQYQKDGHDIPFETFLGFKG
DKVPDIDLNFSGEYQPKAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYANDHNIIY
RGAEVDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADATGSEWRTTHFDFH
SIHDNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGTESLGVSEEQIMC
KTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIHNKICTLSE
VIGCRDDIMVYLIYQGLEPSFAFKIMESVRKGKGLTDEMEEEMKKQEVPDWYIDSCLKIK
YMFPKAHAAAYVLMAVRIAWFKVHHPLLYYAAYFTVRADDFDIETMVKGSTPIRAKIEEI
NLKGLDAAPKEKSLLTVLELALEMCERGYSFQKVDLYRSSASEFIIDGDTLIPPFNSIPG
LGTNAAINIVNARKDGEFLSKEDLQQRGKVSKTIIEYLNAQGCLDELPDQNQLSLF
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagtgaaccaaattgagcgatttcaactcctgctccaacaaataaatttaact
gaagatgcagctgtcgttcattttaaaaatggttcaattgccaaattaaccgttcataaa
catacaaaaaattggcatttccattttcaatttgaaaaaatactaccatttgatgtatat
caattgtttcaagcaaaacttgttaagtctttttctcatatagccgatattacattttct
attgaaacgaaggatccagtttttgatgaaaaacttgtacaagattattggtcaatttgt
attcagcaaatggatgggatttctccgccaatgctcgctcttttaaatgagcaaaaaccg
actttacaaggtataaaagtaatcgtaaagacaaaaaacgatactgaggcaatgacaatt
aagaagaaatatgcccaccttattcaagaaagttttcaggagcttggattccctactttt
caaatggatacaaccgttgcagtaacaaaagaagagattcaaaggtttcaagaacaaaag
ctgcaagaagataaagaaaaagggctaaaagcattaacggatatgatgaatgctgagaag
gaagaatcaactaagccagaattcactggtcctttaacaataggatataccattaaaaat
gatgaagaaattcgtactcttgcttctattgaagatgaagaaagaagagtggcaattcaa
ggatatgtttttgatgctgaaacgaaagaattaagaagtggacgaacactccttaccttt
aaaattacagattatacaagctcaatccttgtaaaaatgttcgctagagataaagaagat
gcagtattagtacaagctgtgaaaaaaggtatgtggttaaaagtacgcggtagtattcaa
aatgacacattcgtacgcgatttagttatgattgctaatgacataaatgaagtcaatgca
caagaacgtcaggatctatcgccagaaaatgagaagcgggttgaacttcatttacactca
ccaatgagtcaaatggatgctgttacttcagtcagtaaatatattgaacaagcgaaaaaa
tggggacataaggctattgctttaacagatcatgcagtagcgcaatcttttcctgaagca
tattctgcagggaaaaagaacggtgttaaaatattatatggtgttgaaatcaatctagta
aatgacggcgtaccaattgcatataatgatgataatcgatatttaccggatgaaacatat
gttgtttttgacgttgagacaacaggcttatctgctgtatatgacacgattattgagcta
gcagcagtaaaagtccgtggtggagaaattatcgatcgctttgaatcattcgctaatcca
catcatccactatctgctataaccattgatttaactggaataacagatgatatggtaaaa
gacgcaccgaatgttgatgaagtccttcgagattttaaagagtggatcggcaatgatatt
ttagtagcacataatgctagctttgatatgggctttttaaatgtcggatataagaagtta
ttaggtgaagaaaaggctaaaaaccctgtcattgatacattggagctcggtcgtttcctc
tatcctgagcttaaaaatcatcgactaaatacactttgtaaaaggttcgatatcgaatta
actcagcatcaccgtgccatttatgatgctgaagcgacaggttatttactcattaagatg
ctgaaagatgcagcagaaaaaggcatcgaaaatcataatcaatttaatgacaatatgggt
aaaggcaatgcttatcagcgttctagaccataccatgcaacaattcttgcccaaaatgaa
actggattgaaaaatttatttaaactagtatcaatttcacatatgaattatttttatcgt
gtgcctcgaattcctcggtcgctactaaataaataccgagaaggtctaattgtcggatca
gcatgtgacaaaggtgaagttttcgaagggatgatgcaaaaatctcctgaagaagtggaa
gaaattgccgcatattatgattatttagaggtacatcctttagaggtatacaatcattta
atagatttagattatattaaagatgaaacggcattaaaagaaattgtgtcaaatattgtt
aatcttggtgaaaaactagagaaacctgttgtagcaacagggaatgtacattatttaaat
cctgtggataaaatatatcgcaaaatcttaattagctcgcaaggtggtgcaaatccactt
aatcgtcatacattaccaaatgttcattttcgaacaacggatgaaatgatgagctgtttt
tccttccttggaaaagataaagcaaaagagattgttatagagaacaccaataaaattgcc
gacatgatcgatgaaattaaaccaataaaagatgatttgtacactcctaaaattgaaggt
gcagatgaagaaattcgggcaatgagttattcaagagcaagaagtatttatggtgagaat
ttaccggaactagttgaagcacgccttgaaaaagaacttaagagtattattggacatggt
ttcgcagtcatttatttaatttcacataaactagttaaaaaatccctcgatgatggatat
ctagttggatcacgtggatctgtcggttcatcattcgttgctacaatgacggaaataact
gaggtaaatccactgccgccacattatgtatgcccagaatgtcaacactctgaatttttt
aatgatgggtctgttggttctggttttgacttaccgaataaagaatgtccgaattgtggt
gcacaatatcaaaaagatggacatgatattccattcgaaacattccttggctttaaagga
gataaagtacctgatattgatttaaacttctctggtgaatatcaaccaaaggcacataac
tatacaaaagttctattcggtgaagataatgtgtaccgtgctggaacaataggaactgtt
gcagaaaaaacagcatatggctatgtaaaaggttatgctaatgatcataacattatctat
cgaggtgccgaggttgatcgtctcgttcaaggatgcacaggtgtaaaacgaacaacagga
caacatccaggtggtattattgttgtaccggattacatggatatatttgatttttcacca
attcaatttccagcagatgcaacaggatccgaatggcgcacaacccattttgacttccat
tctatccatgataatttattaaagctagatattcttgggcacgatgatccaaccgttatc
aggatgctacaagatttaagcggaattgacccaaaaacgattccgacagatgatcctgaa
gtaatgaaaatttttagcggtacggaatctttaggagtatctgaagagcaaattatgtgt
aagacaggtacattagggattcctgaattcggaactcgctttgtaagacaaatgcttgaa
gatacaaaaccaacaacattctctgagcttgtccaaatttctggactttcacacggtaca
gatgtttggcttggaaatgctcaagagttaattcataacaaaatttgtacgttaagtgaa
gttataggttgtcgtgatgatataatggtctatcttatctatcaaggcttagaaccttca
tttgcctttaagatcatggagtctgtacgtaaaggtaaaggtttaacagatgagatggaa
gaagagatgaaaaagcaagaagtacctgattggtacattgactcttgcttgaaaataaaa
tacatgttcccgaaagcccatgcggctgcgtatgtattgatggctgtgcgtattgcttgg
tttaaagttcatcatccacttctttattatgcggcatatttcacagtccgtgccgatgat
tttgatattgaaacaatggtaaagggttcaactccaataagggctaaaattgaagaaatt
aatctaaaagggttagatgcagctccaaaagaaaaaagtttacttacagttttagaatta
gcattagaaatgtgcgagagaggctattcattccaaaaagttgatctttaccgctcaagt
gcatctgagtttatcattgatggagatacacttattcctcctttcaactctatcccgggg
cttggaactaatgcagcaataaacattgtgaatgctagaaaagatggggaatttctttca
aaagaagatctacagcaacgtggtaaagtctcaaaaacaattattgagtatttaaatgcg
cagggctgtttagacgaactaccagatcaaaaccaattatcactattttaa
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