Metabacillus sediminilitoris: GMB29_20240
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Entry
GMB29_20240 CDS
T07731
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
msem
Metabacillus sediminilitoris
Pathway
msem03410
Base excision repair
msem03430
Mismatch repair
msem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GMB29_20240 (recJ)
03430 Mismatch repair
GMB29_20240 (recJ)
03440 Homologous recombination
GMB29_20240 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msem03400
]
GMB29_20240 (recJ)
DNA repair and recombination proteins [BR:
msem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GMB29_20240 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GMB29_20240 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GMB29_20240 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QGQ47382
LinkDB
All DBs
Position
complement(4199705..4202062)
Genome browser
AA seq
785 aa
AA seq
DB search
MLKPKTRWVVQTSDESLINTLIDELSITRLVASLLVNRGITTTQEAREFLQAEQKAFHDP
FLLKDMDKAVRRIMKAIEAQEKILIYGDYDADGVSSTTVLLTTLRKLGAIADFYIPNRFT
EGYGPNETAFRQAHDNGFTLIITVDTGIAAVHEADIARELGVDLIITDHHEPGPTLPSAL
AIIHPKQPQCSYPFKDLAGVGVAFKLSHALLGELPSDLLEVAAIGTIADLVPLHGENRLI
AKKGINQLKTTKRIGLQALLKIAKVNSSEINEDTIGFALAPRINAVGRLQSADPAVDLLL
SDDSEEAFDIAQEIDSLNKERQKIVSSMTDEAIEEVETNFPIAENPVLVIAREGWNPGVV
GIVASRLVERFYRPTIVLSIDKEKGIAKGSARSIVGFDLFENLSTCRDILPHFGGHPMAA
GMTLELENVDLLRTRLVKNAESILSDDDFTPITKVDISCNLEEITLKAIEEMQQLAPFGM
YNPKPVIKVENVTLANVRKIGAEQNHLKLVFEQEEHQLDSVGFGLGHIHDELSPAVTLSA
IGELSINEWNNFRKPQLMLQDVKVDSWQLFDFRGTRNVEKLLKTVALNENTLIITYRFSI
FEKLKKQGFQKNTVFVDSMSNAQQMDVKNKNLVLLDIPSSLDLLESLFTHGKPDRIYSVL
QQEADHFFSTIPTREHFKWYYGFLLKKGPFKLEEHGEQLAMHKGWSKETIEFMSQVFFDL
EFVTIENGVITTKSSSQKRDLAESKTYAQKQMQIELEKTLLYTSYMQLKEWFEERFTATN
PHVFV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacctaaaaccagatgggtcgtacaaacatctgatgaatctttaattaataca
ctaatagatgaattgtcgattacacgtctagttgcatcactactcgttaatcgcggcatt
acaacaactcaagaagctcgtgaatttttacaagcggaacaaaaggcttttcacgatcct
tttttattaaaagatatggacaaggctgtacgccgaataatgaaagcgatcgaagcccaa
gaaaaaatattaatctatggtgactatgatgcagacggtgtgagtagcacaacagttctg
ttaactactttaagaaaattaggagcaatagctgatttttatatacctaatcgatttact
gaaggatacgggccaaatgaaacagcatttagacaagcacatgataacgggtttaccctt
atcatcacagtcgatacaggtattgcagccgtacatgaggctgatatcgcaagagagctt
ggtgtggatcttattattactgatcaccatgaaccaggccctactttaccttctgcgtta
gctataattcatccgaagcaaccacaatgttcatacccttttaaggatttagctggtgtt
ggagttgctttcaaattaagccacgcccttctcggcgaactgccatcagatttattagaa
gttgcagcgataggaacgattgcagatcttgtcccacttcatggtgaaaatagacttatc
gccaaaaagggtattaatcaattgaaaacaaccaaacgcataggattacaagcattatta
aaaattgcaaaagttaatagctcagagattaacgaagatacaattggctttgccttagcg
cctcgtattaatgcggtcggccgtctccagtctgcagatccggcagttgacttattatta
tcagatgactctgaagaagcttttgatattgcacaagaaatagattcattaaataaagaa
cgtcaaaaaattgtaagctctatgacagatgaagcaattgaggaagtagaaacaaatttt
ccaattgccgaaaatccagttcttgttattgctagggaagggtggaatccaggagttgtc
gggattgtcgcatcacgattagttgaacgcttttacagaccaacaattgtccttagtatt
gataaagaaaaaggtattgcaaaaggttccgcaagaagtattgtaggatttgatttattt
gaaaatctctcaacctgccgagatattttaccgcattttggtggacacccaatggcagca
gggatgacacttgaattggaaaatgtagacttattaagaacacgtttagtgaaaaatgca
gagagtattttatcagatgatgactttacaccaattacaaaggtcgatataagctgtaat
ctggaggaaattaccttaaaagctattgaggaaatgcaacagctcgcaccttttgggatg
tacaatccaaaacctgttattaaagtcgagaatgtaacattagcgaatgtgcgcaaaatt
ggggcagaacaaaatcatctaaagctcgtctttgagcaagaagaacatcaattagatagt
gttggctttggattaggacatattcatgatgaattatcaccagctgttaccttatctgca
attggggaattatcgatcaacgaatggaataactttagaaaaccgcaattaatgcttcag
gatgtaaaggtagatagctggcagctgtttgacttcagaggaactcgaaatgttgaaaaa
ttattaaaaacagttgcattaaacgaaaacactttgattattacgtatagattttctata
tttgagaaattgaaaaaacaaggttttcaaaagaatacggtctttgttgactcaatgtct
aatgctcagcaaatggacgtgaaaaataaaaatcttgtcctattagatattccttcttca
cttgatctacttgaatcgttatttactcatggaaaacctgatagaatatattctgtgctc
caacaagaagcagatcactttttttcgacaattccaacaagagaacattttaaatggtat
tatggttttctcttaaaaaaaggcccatttaagctagaagaacatggtgagcaacttgca
atgcataaaggatggtcaaaagaaacaattgaatttatgtcacaggtgttttttgatcta
gaatttgttacaatagagaatggtgttattacgacaaaatcttcgtctcaaaaaagagac
ctggcagaatcgaaaacatatgctcaaaagcaaatgcaaatcgaactagaaaaaacgtta
ttatatacatcttacatgcagcttaaagaatggtttgaagaaagatttacagctacgaat
ccgcatgtatttgtataa
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