Mycobacterium seoulense: MSEO_48030
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Entry
MSEO_48030 CDS
T07134
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mseo
Mycobacterium seoulense
Pathway
mseo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mseo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSEO_48030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mseo03021
]
MSEO_48030 (rpoC)
03400 DNA repair and recombination proteins [BR:
mseo03400
]
MSEO_48030 (rpoC)
Enzymes [BR:
mseo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSEO_48030 (rpoC)
Transcription machinery [BR:
mseo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSEO_48030 (rpoC)
DNA repair and recombination proteins [BR:
mseo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSEO_48030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBY04304
UniProt:
A0A7I7P6X6
LinkDB
All DBs
Position
5148683..5152633
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEADSLRDIIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEVDGDKGEFQ
PAAKDQPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPTEIETELFGTNGWQPGD
AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIIVE
LAERQPDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPSIDALLAAGITQI
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVQLEEGERFYKITIVPDDGSEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaacttcgcattggcctggccaccgcggaggacatc
aggcaatggtcttacggcgaggtcaagaagccggagacgatcaactaccgcacgctgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgtgccgagccggctcggttacctgctcgacctc
gccccgaaggatctcgagaagatcatctatttcgcggcgtacgtgatcacggcggtcgac
gacgagatgcggcacaacgagctgtccacgctcgaggccgaaatgatggtggagcgcaag
gccgttgaggaccagcgcgacgccgacctggaggcccgcgcgcagaagctcgaggccgac
ctggccgagctggaggccgagggcgccaaggccgacgcccgccgcaaggtccgcgacggc
ggcgagcgggagatgcgccagctccgcgaccgggcccagcgtgagctggaccggctggag
gacatctggaacacgttcaccaagctggcccccaagcagctgatcgtcgacgagaacctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggtgcgatgggcgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaggcggactcgctgcgcgacatc
atccgaaacggcaaggggcagaagaagcttcgcgccctcaagcggctgaaggtggtcgcc
gccttccagcagtcgggcaactcgccgatgggcatggtgctcgacgccgtcccggtcatt
ccgccggaactgcgcccgatggtgcagctcgacggtggccggttcgccaccagcgacctg
aacgacctgtaccgccgggtcatcaaccgcaacaaccggctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgtcgcggccgcccggtcaccgggccgggcaaccgcccgctgaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagctgatggccctcgagctgttcaagccgttcgtgatgaagcggctc
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcggcagcgt
ccccaggtgtgggacgttctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gccccgaccctgcaccggctgggcatccaggccttcgagccgatgctggtggaaggcaag
gcaattcagctgcacccgttggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctctccgccgaggcgcaggccgaggcgcgcatcctgatgctg
tcgagcaacaacatcctgtcgccggcctccgggcgtccgctggccatgccgcgactggac
atggtgaccgggctgtacttcctgacgaccgaggtcgacggcgacaagggcgaattccag
ccggccgccaaggatcagccggaggtcggcgtgtactcctcgccggccgaggcgatcatg
gccgccgaccgcggcgtgctctcggtgcgggccaagatcaaggtgcgactgacgcagctg
cgtccgcccaccgagatcgagacggagttgttcggcaccaacggctggcagccgggcgac
gcctggatggccgagaccacgctgggccgcgtgttgttcaacgagctgctgccggtgggc
tacccgttcgtgaacaagcagatgcacaagaaggtgcaggccgccatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggt
ttctactgggcgacccgcagcggtgtcaccgtctcgatggccgacgtgttggtgccgccc
cgcaagaaggagatcctcgaccagtacgaggagcgggccgagaaggtcgaaaagcagttc
cagcgcggcgctttgaaccatgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctccgcgagcactatcccgccgacaacccgatcatc
acgatcgtcgactcgggtgccacgggtaacttcacccagacccggacgctggccggcatg
aagggcctggtgaccaaccccaagggcgagttcatcccgcgcccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacgcacggcgcccgaaagggcttg
gcggacaccgcgttgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtg
agccaggacgtcatcgtccgcgagcacgactgccagaccgagcgcggcatcatcgtcgag
ctggccgagcgtcagcccgacggcaccctgatccgcgacccgtacatcgaaacctcggcg
tacgcacggactctgggtgccgacgcggtggacgaggccggcaacgtcgtcgtcgcgcgc
ggcgaggacctgggcgacccgtcgatcgacgccctgctggcggccggcatcacgcagatc
aaggtgcgctcggtgctgacgtgcaccacgggcaccggcgtgtgcgcgacctgttacggc
cgctccatggcgaccggaaagctggtcgacatcggcgaggccgtcggcatcgtcgcggcc
cagtccatcggtgagcccggcacgcagctgaccatgcgcaccttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccacgggtgcaggagctattcgaggcccgcgtgccg
cgcggtaaggcgccgatcgccgacgtcaccgggcgggtgcagctggaggagggcgagcgc
ttctacaagatcaccatcgttcccgacgacgggagcgaggaggtcgtgtacgacaagctg
tccaagcgccagcggctgcgcgtgttcaagcacgaggacggctccgagcgggtgctgtcc
gacggcgaccacgtcgaggtgggccagcagctgatggagggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccgcgcgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtgatcgtccggcag
atgctgcgccgcgtcacgatcatcgactcgggcgcaacggaattcctgcccggctcgctg
atcgaccgtgcggagttcgaggcggagaaccgccgggtggtggccgagggcggcgagccc
gccgccggccgcccggtgctgatgggcatcacgaaggcgtcgctggccacggactcgtgg
ctgagtgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggcatcaaccggtaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggtgccgcggttccgctggacgactacggctactccgactaccggtag
DBGET
integrated database retrieval system
