Mergibacter septicus: CEP49_02600
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Entry
CEP49_02600 CDS
T08622
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
msep
Mergibacter septicus
Brite
KEGG Orthology (KO) [BR:
msep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msep03016
]
CEP49_02600 (rnd)
Enzymes [BR:
msep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CEP49_02600 (rnd)
Transfer RNA biogenesis [BR:
msep03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CEP49_02600 (rnd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AWX13518
LinkDB
All DBs
Position
complement(580620..581762)
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AA seq
380 aa
AA seq
DB search
MKQKLSDFDYVLITTETELEQICQQARQQPVVALDTEFIRIRSYYPKLGLIQLYDGQQVS
LIDPLQISDFTPFIELLADSKVLKLLHAGSEDLEIFQHQFQQMPMPMVDTQIMADFLGFP
LSVGFAKLVEHFFEVHIDKAISRTDWLARPLSLKQCYYAGSDVFYLLPIYQKLQQQLVET
QWYQAVIDESEALIYKRQRQIDPDLAYLEIGNAWRLNRQELTVLQKLAKWRLTEAIKRDL
APNFVLKSESLYRLAQTQPKHTSQLFELELHPNEIRHHGKKLLSLIAQAQRIDPTQYPPL
VANIALNPNYKKAIRLLQNNIKKLTPTGLTPQLIGSKRLLHQLLTWYWQKNNTEKVPKLL
QNWRKPFGEQLLILLQQGGI
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaaactatcagattttgattatgttttaattacaacagaaactgagttagag
cagatctgccaacaagctcgtcaacaacctgtagttgcattggatacggaatttattcgt
attcggagttattatccaaaattgggattaattcagttgtatgacggacagcaagtaagt
ttgatcgatccattgcaaatctcagattttactccttttattgagttacttgcagactct
aaggtgctgaaattattacatgcagggagtgaggatttggagatttttcaacatcaattt
caacaaatgccaatgccaatggtagatacacaaattatggctgattttcttggttttcca
ctatcagtagggtttgcgaagttagttgaacatttttttgaggttcatattgataaagcg
atttctcgtacggactggttagctcgccctttatcgcttaagcagtgttattatgctgga
agtgatgtattttatttattacctatttatcaaaaattacagcaacagctagttgaaaca
caatggtatcaagcggttattgatgagagtgaagcgttaatctataagcgtcaacggcaa
attgatccagatttagcttatctggaaataggtaatgcgtggcgattaaatagacaagaa
cttactgtattacaaaaattagcaaaatggcgtttaactgaagcgattaaacgggatctt
gcgcccaattttgttcttaaaagtgagtctttatatcggcttgcacaaactcagccgaaa
catacttcacagttgtttgagttagagctacatccaaatgaaattcggcatcatgggaaa
aaattactgagtttaattgcacaagcacaacggattgatcctacacaatatccgccttta
gtcgcaaatattgctttgaatccgaattataaaaaagcaatacgtttgttacaaaataac
attaaaaaacttacaccaacaggtttaacaccacaattaattggcagtaaacgtttgtta
catcaattattaacttggtattggcaaaaaaataacacagaaaaagtgcctaaattgtta
caaaattggcgtaaaccctttggtgaacaattactaattcttttacaacaaggaggaatt
taa
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