Mergibacter septicus: CEP49_03240
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Entry
CEP49_03240 CDS
T08622
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
msep
Mergibacter septicus
Brite
KEGG Orthology (KO) [BR:
msep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msep03016
]
CEP49_03240 (rnb)
Enzymes [BR:
msep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CEP49_03240 (rnb)
Transfer RNA biogenesis [BR:
msep03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CEP49_03240 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AWX13637
LinkDB
All DBs
Position
complement(734434..736419)
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AA seq
661 aa
AA seq
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MFQNNPLLSQLKQQIRDNKPKVEGTVKSTDKAYGFLECDKKSYFLPPLAMKKVMHGDKIC
ALIETVDGKEQAEPESLLEPFLTRFIARVHFNKDNKLQLFVDHPNIKQPISASVSKQCEQ
KLSDGDWVVATLKNHPLRDQRFFSAKVEQLICRADDQFAPWWVTLARHQQPREPVIGLDD
YPFDQSVERQDLTHLHFVTIDSASTQDMDDALYIEPIYTAEQQQRGWQLWVAIADPTAYI
PEDSQIERDARQRCFTNYLPGFNIPMLPRELSDQLCSLMPQQKRPAVVCQLMVNLEGALV
NEPSFQLAWIESKAKLAYDDVSDFIEQITGRWQPVDEDTRQQIKALHQFTLARIDWRTKH
ALMFKDRPDYSFILAENGEVKEIRAEYRRIANRIVEECMIVANIGAAQFLAKNAGCGIFN
THSGFDKKFLANAQQFLLDNLADQSNTAQLAERYALDKLTTLAGYCQMQRDLEGEQQHYL
ELRLRRYLSFAEFKTELAPHFGLGLEGYATWTSPIRKYSDMVNHRLIKAVLHQQPCQPPE
ASILARLQEARKQNRLVERDIADWLYAIYLAPKVEQNLEYQAEIVDISRGGLRVVLNDNG
ATVFIPLPTLHSNKEEIAVNSDQLALYIKGERKYQLGQTVKLKLTTVKLETRSIVGELIE
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataatcctttattaagtcagttaaaacaacaaattcgtgataataaacca
aaagttgaaggcacggtaaaaagcacagataaagcttatggctttttagaatgtgataaa
aaaagttattttcttcccccacttgcgatgaaaaaagtgatgcacggcgataaaatttgt
gcattaattgaaacggtggacggtaaagagcaggcagaaccagagagtttattggagccg
tttttaacccgttttattgctcgagttcattttaataaagataataaactacaacttttt
gtcgatcatcctaatattaaacagcctatttctgctagtgtatcaaaacaatgcgaacaa
aaattatctgatggagattgggttgttgcaactttaaaaaatcatcctttacgagatcaa
cgtttctttagtgcaaaagtagagcaattaatctgtcgagcggatgatcaatttgcacct
tggtgggtaacgttagcacgccatcaacaaccaagagaaccagttatagggctagacgac
tatccttttgatcagagcgtggaacgtcaagacctgacgcatttacattttgttaccatt
gattcagcctctactcaggatatggatgatgcactctatattgaaccgatttatacggca
gaacagcaacaaagagggtggcaattatgggtagcgattgccgatccaactgcttatatt
ccagaagatagccaaattgaacgtgatgcgagacaacgttgttttaccaactatctaccg
ggctttaatattccaatgttgccacgtgaattatcggatcaactctgttccctgatgcca
cagcaaaaacgtccagcggtagtgtgtcaattaatggtgaatttagagggggctttagtt
aatgaacctagttttcaactagcttggattgaatcaaaagcaaaattagcttatgacgat
gtatcggattttattgagcaaataacaggaagatggcaaccagtagatgaggatactcga
caacaaattaaagcattgcatcaatttaccctcgcacggattgattggcgtactaaacac
gcactgatgtttaaagatcgtcctgattatagttttattttggctgaaaatggtgaggtt
aaagagattcgagcagaatatcgccgcattgcaaaccgtattgttgaagaatgtatgatt
gtcgctaatattggtgcagcacaattcttagccaaaaatgcaggttgtggtattttcaac
acccacagtgggtttgataaaaaattcttagcaaatgcacaacaatttttattagataac
ttagccgatcagtcaaatacggcacaattagcggaacgttatgctttagataaactcaca
acattagcaggttactgccaaatgcaacgtgatctggaaggggagcaacaacattactta
gaattgagattacgccgttatctctcttttgctgaatttaaaacggaattagcaccacat
ttcggtttaggtttagaaggatatgcgacttggacatcacccattcgtaaatatagcgat
atggttaatcaccgtttaattaaagcggtattacaccagcaaccttgccaaccacctgaa
gctagtattctggcacgtttacaagaagcacgtaaacaaaatcgtttagttgaacgagat
attgccgactggctatatgcaatttatcttgcacctaaagttgaacaaaatcttgaatat
caggctgagattgttgatatctcacgtggtggattaagagtagttttaaatgacaatggt
gccactgtttttattcctttgccaactttacattcaaataaagaagaaatagcggtaaat
agtgatcaattagctttatatattaaaggcgaaagaaaatatcaactaggtcaaacggtt
aaattaaaattaaccacagtcaaattagaaacaagaagtattgtgggagaattaattgaa
gggtaa
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