Mergibacter septicus: CEP49_06560
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Entry
CEP49_06560 CDS
T08622
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msep
Mergibacter septicus
Pathway
msep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEP49_06560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msep03019
]
CEP49_06560
03009 Ribosome biogenesis [BR:
msep03009
]
CEP49_06560
Enzymes [BR:
msep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CEP49_06560
Messenger RNA biogenesis [BR:
msep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEP49_06560
Ribosome biogenesis [BR:
msep03009
]
Prokaryotic type
rRNA processing factors
CEP49_06560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
AWX14233
LinkDB
All DBs
Position
complement(1452801..1455920)
Genome browser
AA seq
1039 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGIITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPTDYVFDGRPNIKDIIKDGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVLMPNNPKAGGISRRIEGEERQELKEALSSLAIPDGVGLIIRTAGVGKSPEEL
QWDLHILLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIYEKA
KAHIKLVRPDFTNRIKLYQGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPIRHQREVEN
RLRDAVRQDRARIQISRISRLGLLEMSRQRLSPSLNESSHHICPRCQGTGKVRDNESLSL
SILRLLEEEALKEHTKQVHTIVPVKIATYLLNEKRKTIADIEKRHNVDILVVPNEHMETP
HFSVFRFRNGETTNTLSYNLAKLHEEQDDYCMSEDALVSRKIEIPTANSTDTAAVEINIP
SPAPVIERKEKEKISLFSRLINFIKKLFSSDTTEEKESKGRNQRRRRNSNRREREKETRQ
NRQTRNEKRENKTQSEKESNKRNNRSNQKANTEADKVKDLPITELQEQTKEQNVTPRRQR
RDLRKKVRLTQEVETVITEQNQTETIITETTTPSEKVVSTPEPVSKTVIFEEKTLVSQQN
RLTEEIIELPVVTDNSTETVTTETNTSERHHKEGRQRRSPRHLRMGKQRRRHQHNDELKI
SPMPLFMAVASPELASGKIHISLAKPQPIKEANFVSVDEMLQQQSVETNTILPATAIVEE
QKPVKPLIDVLTMIANGKEGKPEQPHFPSEQGEVITVSTPAIVADAITEEQQATVVEIQP
NLETENDTLENTAKIIPSPVQPVEEKTITSEPQKMTRVTSKATAAPALSEMGTLTVDVKQ
YQSTFLFKGRVGTISSVQHTKAKATVAPSVQHLPTEIDITEWKGSRFSFRGRRKAGHHAA
AEHIYVEPTQTRVKTENIE
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcaaaaagaggagttgcgagtcgccctagttgat
gggcaacgactgtttgacttggacattgaaagtccggggcacgaacaaaaaaaagccaat
atttataaagggataatcacccgagttgaaccaagccttgaagccgcatttgttgactat
ggtgcagaacgccacggtttcctaccattaaaagaaattgcacgagaatacttccctaca
gattatgttttcgatggacgtcccaatatcaaagatattatcaaggatggtcaagaagtt
attgttcaagttaataaagaagaacgtggcaataaaggtgcagcattaaccacttttgtt
tctctagcgggtagttatctagttttaatgccaaacaaccctaaagcgggtggtatttct
cgccgtattgaaggggaagaacggcaagaattaaaagaggctttaagttcgttagctatt
cctgatggcgttggcttaattatccgcactgcaggtgtaggaaaatcgcctgaagaatta
caatgggacttacatattctactacaccactgggaagcgattaaacaagcctcacaatct
cgccctgcaccattcctcattcatcaagaaagtgatgttattgttcgtgcaattcgagac
tatttgagacgagatattggtgaaattctgattgatagccctaaaatttacgaaaaagcc
aaagcacatatcaagctagtgcgtcctgattttacaaatcgaattaaactttaccaaggt
gaagtcccactctttagccattttcaaattgaatcacaaattgaatccgctttccaacgt
gaagtccgtttaccttctggaggttcaattgttattgatgtcaccgaagcattaaccgca
attgatattaactcatctcgttctactcgtggtggcgatattgaagaaaccgcattaaat
actaatctagaagctgccgatgaaatagctcgccaattacgtttgcgtgatttaggcggg
ttaattgttattgattttattgatatgacgcctattcgccatcaacgtgaagtcgaaaat
cgcttgcgtgatgccgtaagacaagatcgagctagaattcaaattagtcgaatttctcgc
ttaggcttactagaaatgtctcgccaacgtttaagcccgtcattaaatgaatcaagccat
catatttgccctcgttgtcaaggtacaggtaaagtgagagataatgaatcactctcttta
tccattttgcgtttattagaagaagaagcattaaaagaacacactaaacaagttcatact
atcgtaccagtaaaaattgccacctatctcttaaacgaaaaacgtaaaacaatcgcagat
attgagaaacgccataacgttgatattcttgttgttccaaacgaacatatggaaacaccg
catttctctgtattccgttttcggaatggagaaaccaccaatacattaagttataacttg
gcaaaattacacgaagaacaagacgattactgtatgtcggaagacgctttagtaagtcgt
aaaattgagattcctaccgcaaattctaccgataccgctgcagttgaaatcaatatccct
tcacctgcaccagtgattgaacgtaaagaaaaagagaaaatctccttattttctcgtttg
attaattttatcaaaaaactcttttcaagtgatacaaccgaagaaaaagaaagtaaggga
cgcaatcaacgccgtcgtcgcaattcaaaccgccgtgagcgtgaaaaagaaactcgtcaa
aaccgacaaacacgtaacgaaaagcgtgagaataaaactcaaagtgaaaaagagtcgaac
aaacgcaataatcgtagcaatcagaaagcaaataccgaagctgataaagtaaaagactta
ccgataacagaattacaagaacagacgaaagaacaaaatgttacgcctagacgtcaacgc
agagatcttcgtaaaaaagttcgtttaactcaagaagtagaaacagtaataactgaacag
aatcaaactgaaacgattatcaccgaaacaacgacaccatcagaaaaagttgtttctaca
cctgaaccagtaagtaaaacagtgattttcgaagaaaaaacgcttgtttcacaacaaaat
agactaacagaggagataattgagttaccagtcgttactgacaattcaactgaaacagta
acaacggaaacaaacacctctgaacgccatcataaagaaggacgtcaacgccgttcacct
cgtcatttacggatgggtaaacaacgtcgccgtcatcagcataatgatgaactgaaaata
tcaccaatgccactctttatggcggttgcgtcaccagaattggcaagtggaaaaattcat
atttcactggcaaaacctcagccaatcaaagaagcaaactttgtgtcagttgatgaaatg
ctccaacagcaatcggtagaaaccaatacgatattaccagcaactgctattgtggaagaa
caaaaaccagtcaaacctttgattgatgttttaactatgattgcaaatgggaaggaagga
aagccagaacaaccgcattttccttctgaacaaggagaggtaataacagtttcgacacct
gcgattgtagcagatgccattactgaggaacaacaagcaaccgttgtagaaatccaacct
aatctcgaaactgagaatgatacgttagaaaatacagcgaaaattatcccttcaccagtt
caacctgttgaagaaaaaacaataacgtcagaacctcaaaaaatgactcgagtaacttca
aaagccactgctgctcctgcactttctgaaatgggtactttaactgttgatgtaaaacaa
tatcaatctacctttctattcaaggggcgagtagggactatttcatcggtacaacatacc
aaagcaaaagcaactgttgcaccaagtgtgcaacacctgccaactgagattgacataaca
gaatggaaaggatctcgttttagcttccgtggtcgccgaaaagcagggcatcacgccgca
gctgaacatatttatgttgaaccaacgcaaacaagagttaaaactgaaaatatagagtaa
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