Mergibacter septicus: CEP49_07675
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Entry
CEP49_07675 CDS
T08622
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
msep
Mergibacter septicus
Pathway
msep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEP49_07675 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msep03019
]
CEP49_07675 (rnr)
03016 Transfer RNA biogenesis [BR:
msep03016
]
CEP49_07675 (rnr)
Enzymes [BR:
msep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CEP49_07675 (rnr)
Messenger RNA biogenesis [BR:
msep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEP49_07675 (rnr)
Transfer RNA biogenesis [BR:
msep03016
]
Prokaryotic type
tRNA degradation factors
CEP49_07675 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
AWX14415
LinkDB
All DBs
Position
complement(1684193..1686526)
Genome browser
AA seq
777 aa
AA seq
DB search
MLKYQDPNYAKEVAKYGNPIPSRELILSTIQQRNSLSREEIQAIFHLKNKEQQEAMRRRL
RAMENCGQLILTKRKRYALPETQGFLKGTVLGHRDGYGFLQVEGRKDDYFIPNIEMQKVL
DGDQVLAQLKGTDKRGRQEIRITRIIESRKKHIVGRFFSEDGIGYVVPDDSRINQDILIP
NEARLGARMGQVVVVELTSRRNNHKLIGTIIEVLGDNLAKGMEIEIAIRHYEIPHSFSET
VQQEITYLSEEVPESAKKGRVDLRQLPLVTIDGEDARDFDDAVYCQANPNGGWRLWVAIA
DVSYYVRPKTALDSSAYQRGNSVYFPNRVIPMLPEKLSNGLCSLNPQVDRLCLVCEMTIS
TTGKITGYQFYQAVMNSHARLTYNKVWKILQGDEALSQRYQHLVPHLNQLYQMFKVLQQA
KQQRGAIEFETIETKFIFNTQGRIEQIKPLKRNDAHKIIEECMILANIAAANFVASHQVP
ALFRIHAQPSEEKLTSFKDFLRECGLTLSGGLQPSPSDYAQLMEKVQNRPDKELIQTMLL
RSLSQAVYSADNIGHFGLALKEYAHFTSPIRRYPDLSLHRTIKALLARQTNTPKLYQQGG
AYHYNLEQIDQFGEHCSMTERRADDATRDVADWLKCEFMQDHVGEIFSGTISSVTGFGFF
VRLDDLFIDGLVHISTLTHDYYRFDPASQRLIGESSGMLYRLGDPVKIKVVAVNLEQRTL
DFNLISSERSVRRKGKTAREKNKKYLRQKQNKNGKKSRTFQVKLTKKQKEKIIALQG
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaataccaagatccaaattatgccaaagaagtcgctaaatatggcaatccaatt
ccaagtcgagagctgattttatcaactatccaacaacgaaattcgctaagtcgtgaagaa
attcaagctatctttcacttaaagaataaagaacaacaagaagctatgcgccgacgtctt
cgtgcaatggaaaattgtgggcaattaattttaacaaaacgaaaacgctacgctttacct
gaaacacaaggttttttaaaaggaactgttctagggcatcgagatggctatggcttttta
caagtggaaggtagaaaagatgattactttatccccaatatcgagatgcaaaaagtgtta
gatggagaccaagttttagctcaactaaaaggcactgacaaacgtggacggcaagaaatt
cggattacacgaattattgaaagccgtaaaaaacatattgttggacgttttttctcagaa
gatgggattggctatgtcgtacctgatgatagtcgaattaaccaagatattttaattccc
aatgaagctaggcttggtgcaagaatgggacaagtggtagtagttgaattaacctcacgc
agaaacaatcacaaattaataggaacgattattgaggttctgggtgacaatttagccaaa
ggtatggaaattgaaatagcaatccgccattatgaaattccacatagtttctctgaaacg
gttcaacaagaaattacctatctaagtgaagaagtacctgaatcagccaaaaaagggcga
gttgatctgcgacaacttcccttagtaacaattgatggtgaagatgcaagagactttgat
gatgccgtatattgccaagcaaatcctaatggtggttggaggctttgggttgctattgct
gatgttagctattatgttcgccctaaaaccgcattagatagcagtgcttatcagcgaggt
aactcggtttactttcctaatcgtgttattccaatgttaccagaaaaactatctaatggt
ttatgttcactcaatcctcaagttgatcgcttatgtctagtttgtgaaatgaccatttca
acgacaggaaaaatcacagggtatcaattctatcaagcggtgatgaattctcacgctcgt
ttaacctacaataaagtttggaaaattttacaaggagatgaagctttatctcagcgttat
caacatcttgtgcctcatctcaatcaactttatcaaatgtttaaagtattacaacaagct
aagcaacagcgaggggcgatagaatttgaaactatcgaaacaaaatttatttttaacact
caaggtcggattgaacagattaagccactaaaacgcaatgatgcccacaaaattattgaa
gaatgtatgatcttagccaatatcgctgcggctaattttgttgcatctcatcaagtaccc
gcactatttcgtattcatgcccaaccaagtgaagaaaaattaacctcattcaaagatttt
ttacgtgaatgtggtttaacattatctggtgggctacaacctagcccaagcgattatgct
cagttaatggaaaaagtacaaaatcgtcccgataaagaattaattcaaacaatgctgtta
cgatcgcttagccaagcagtgtactctgctgacaatattgggcattttggcttagcacta
aaagaatatgcacatttcacttcccctattcgccgttaccctgatctgagtttacatcga
acaattaaagccctcttagcaaggcaaaccaatacgccaaaactttatcaacaaggaggg
gcttaccattataatttggaacagatcgatcaatttggtgaacactgttcgatgactgaa
cgccgagctgacgatgccacacgtgatgttgcagattggcttaaatgtgaatttatgcaa
gatcacgttggtgaaatcttcagtggtacaatttctagtgtaacaggtttcggatttttc
gtacgtttagacgatctctttattgatggactggttcacatttcaacattaactcacgat
tactatcgctttgatccagcaagtcaacgtttaatcggagaaagcagtggtatgctatat
cgtctgggtgatcctgtaaaaattaaagtcgttgccgtcaaccttgaacaacgtacgctg
gattttaatcttatttccagtgaaagatccgtgagaagaaaaggaaaaacagctagagaa
aaaaataaaaaatatcttcgtcaaaaacaaaataaaaatggtaaaaaatctcgtactttt
caagttaaattaacaaaaaaacaaaaagaaaaaataattgcattacaaggataa
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