Mycobacterium senriense: MTY59_28600
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Entry
MTY59_28600 CDS
T10222
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mser Mycobacterium senriense
Pathway
mser03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MTY59_28600 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mser03400
]
MTY59_28600 (ligD)
Enzymes [BR:
mser01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MTY59_28600 (ligD)
DNA repair and recombination proteins [BR:
mser03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MTY59_28600 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCZ23005
LinkDB
All DBs
Position
2935647..2937914
Genome browser
AA seq
755 aa
AA seq
DB search
MAPRLKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEEESFF
EKQLASSAPDWLPRASVTHRSGTTTYPIIDSVEGLAWIAQQAALEVHVPQWRFVAEWTRS
RAEELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRELTTGIGLTTYPLTSGSKGLHLYT
PLQEPVSTKGATVLAKRVAQQLEKSMPTLVTSTMTKSLRAGKIFLDWSQNNGAKTTIAPY
SLRGREQPTVAAPRTWEELDDPSLRQLRYDEVLDRVARDGDLLAALDEDAPVPDRLSRYR
SMRDASKTPEPVPVAKPAVGQGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETT
SVNHLAVHTEDHPLEYGGFEGIIPRGEYGAGKVIIWDSGTYEAEKFNDSAEKGEVIVNLH
GSKISGRYALIQTNGNQWLAHRMKDQKVFDFDTIAPMLATHGSVKALKAGQWAFEGKWDG
YRLLIEADHGAIRVRSRRGREVTGEYPELRSLAEDLADHHVILDGEAVVLDSSGVPNFHE
MQNRGRGSRVEFWAFDVLYLDGRSLLRARYSDRRKVLEMLGAGSDLIVPELLPGDGVQAL
EQSGKRGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLL
MGIPTADGLHFAGRVGTGFTERDLTKLKKTLAPLHTDESPFHPPLPRSEARGVTYVEPVL
VGEVRYSEWTPDNRLRQSSWRGLRPDKEASEVVRE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcggctgaaactgaccaacgccgagaaggtgctgtaccccgccaccgggacc
acgaagagcgacatcttcgactactacacgcgcatcgccgaggtgatgatcccgcacatc
gctggtcggccggccacccgcaagcgctggcccaacggcgttgaggaggagtcgtttttc
gagaaacaactggcttcgtcggcgcccgactggctgccgcgcgccagcgtgacacatcga
tccggaacgacgacgtatccgatcatcgacagcgtcgaggggctggcctggatcgcccaa
caggccgcgctggaggttcacgtaccgcagtggcgcttcgtcgcggagtggacccgtagc
cgggccgaggaactgaaacccggcccggcgacccgcctggtgttcgacctcgacccgggt
gaaggcgtcacgatggcccaactggccgaggtggcgcgcgccgtccgcgagctgaccacc
ggaatcgggctgaccacctatccgctcaccagcggcagcaagggcctgcacctttacacg
ccgctgcaggagccggtgagcactaagggtgcgacggtgttggccaaacgcgttgcgcaa
caactggaaaagtcgatgcccacactcgtgacgtcgaccatgaccaagagcctgcgggcc
ggaaagatctttctggactggagtcagaacaacggcgccaagacgaccatcgcgccgtac
tcgctgcgcggacgcgaacaacccaccgttgcggcgccgcgcacttgggaggaactcgac
gacccgtcgctgcgccagctgcgttatgacgaagtgctcgaccgggtcgcccgtgacgga
gatctgctggcagcgctcgacgaggatgcacccgtccccgatcgcctgagcagataccgc
agcatgcgcgacgcgtcgaaaacccccgagccggtcccggttgcgaaaccggctgttgga
caagggaatagcttcgtcatccaagaacaccacgcccgccggctgcactacgacttccgg
ctggaacgggatggcgtgctggtgtcctgggcggtgccgaagaacctgcccgaaacgacc
tcggtgaatcacctggcggtccacaccgaggaccatccgctggaatacggcgggttcgag
ggcatcatccccaggggggagtatggcgccgggaaggtgatcatctgggactccggaacc
tacgaggccgagaagttcaatgactccgccgaaaaaggggaagtcatcgtcaatctgcac
ggcagcaagatctccggacgctatgcactgattcagaccaacggcaaccagtggctggcg
caccggatgaaagatcagaaggtcttcgacttcgacaccatcgcccccatgctggccacc
catggttcggtgaaggctctgaaggcgggccagtgggcgttcgagggcaaatgggatggc
taccggctgttgatcgaggccgaccacggcgccatccgggtgcggtctcggcgcggccgc
gaagtcactggcgaataccccgaactacgttcgctcgcagaagatctcgcggaccaccat
gtgatcctcgacggtgaggccgtcgtcctggactcctcgggtgtgcccaacttccatgag
atgcagaaccgcggtcggggctcgcgcgtcgaattctgggctttcgacgtgctgtacctc
gacggccgctcgctgctgcgagcccggtactcagaccggcgtaaggtgctggaaatgctc
ggcgccggaagcgatctcatcgttcccgagctgctgcccggggacggcgtgcaggcgctg
gagcagtccggcaagcgcggctgggagggggtgatcgccaagcggcgcgactccacctac
cagcccggccggcgctcgtcgtcctggatcaaggacaagcattggaacacccaggaagtc
gtcatcggcggctggaaagcgggggaaggcggacgcagcagcggcatcggctcactgttg
atgggcatccccaccgcggacggcctgcacttcgcgggtcgcgtcggcaccgggttcact
gaacgcgacctgaccaagctgaagaagacgctggcgccgctgcacaccgacgaatccccc
ttccacccaccgctgccccgcagcgaagcccggggcgtgacctacgtcgagccggttctg
gtcggggaggtgcgctatagcgagtggaccccggataaccggcttcgccaatcgagttgg
cgggggctacggccggacaaggaagcaagtgaggtggtacgcgagtga
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