Mycobacterium senriense: MTY59_29780
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Entry
MTY59_29780 CDS
T10222
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mser Mycobacterium senriense
Pathway
mser03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTY59_29780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mser03400
]
MTY59_29780 (mfd)
Enzymes [BR:
mser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTY59_29780 (mfd)
DNA repair and recombination proteins [BR:
mser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTY59_29780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
AAA_22
RecG_dom3_C
UB2H
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BCZ23123
LinkDB
All DBs
Position
3062423..3066079
Genome browser
AA seq
1218 aa
AA seq
DB search
MTAPGAARPETPIAGLVELALTAPTFQQLIDSASASPAELSLVGPASARLFVASALARLG
PLLVVTATGREADDLTAELRGVFGDSVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH
PDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLTVGTEIEFEGVITRLAELAYTRVD
MVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIEVDTLIAV
ACRELLLTDEVRERAAELAARHRTTEPAITGSVTDMLAKIGEGITVDGMEALLPVLRPGE
HVLLTDQLAERTPVLLCDPEKVRTRAADLIKTGSEFLEASWSVAALGTDAPVDVAQFGGS
GFAELDEVRAAAARAGHPWWTLSQLSDESAVELEIRSAPSARGHQHDIDGIFAMLRAHVS
TGGYAVVVAPGTGTAHRVVERLAECDTPAAMLESGAAPKAGVVGVLKGPLHDGVIIPGAT
LVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG
GARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWTNTKTKAR
RAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGYTETVDQLTAITEVKGDMEK
PIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMTGFPV
TVKGLSRFTDGVESKAVIEGLADGSVDMVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH
KEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV
AAALRRELLRDGQIFYVHNRVSSIDRTAARIRELVPEARVVVAHGQMPEERLERTVQGFW
NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
HSPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAAASD
GEIDAVVEELIDRYGALPEPALRLVAVARLRLLCRTAGITEVSAASASTVRLSPMTLPDS
AQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTALQGKPQTDI
GITSELPASMASEERQAR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccgggggctgctcgcccagaaaccccgatcgcggggctcgttgaattggcg
ctcaccgcgccgaccttccagcagttgatcgacagcgcgtccgcttcgcctgccgagttg
agcctggtgggtccagccagcgcacggctattcgtcgccagtgcgctggcgcggttgggt
cctctgctggtagtcaccgcgaccgggcgcgaagccgacgacctgaccgctgaactgcgc
ggggtcttcggcgattccgtcgcggtcttcccgtcgtgggaaacgctgccgcacgagcga
ctttcgcccggcgtcgacaccgtcggcgcccggttgacggtgctgcgccggctggcccat
cccgacgatgcccggctgggtccgcccctgcaggtggtggtgaccgcggtgcgctcgttg
ctgcagccgatgacgccgcagctggggcttgtggagccggtcacgctgacggtcgggacg
gagatcgaattcgagggcgtgatcacccggctcgccgagctggcctacacccgggtcgac
atggtcggccggcgcggcgaattcgccgtgcgcggaggcattctcgacgtcttcccgccg
accgccgagcacccggtgcggatcgagttctggggcgacgaggtcagcgagatgcggatg
ttctccgtcgccgatcagcgctcgatcccggagatcgaggtcgacaccctgattgcggtg
gcctgccgcgaactgctgctgaccgatgaggtgcgggagcgcgccgccgagctggccgcc
cggcaccgcaccactgaacccgccatcaccggcagcgtcaccgacatgctggccaagatc
ggcgagggcatcacggtcgacggcatggaggccctgctgcccgtgcttcggcccggcgag
cacgtgctgctgaccgatcaattggccgagcgcacaccggtgttgctctgcgatccggag
aaggtccggacccgggccgccgacctgatcaagaccggcagcgagttcctcgaagcgtcg
tggtcggtcgccgcgttgggtaccgacgccccggtcgacgtggcgcagttcggtggatcg
ggattcgccgaactcgacgaggtgcgggccgcggcggcgcgcgccgggcatccgtggtgg
acgttgagtcagctgtccgacgagtcggccgtggaactcgagatccgctcggcgccgtcg
gctcggggacatcagcacgacatcgacggcatcttcgcgatgctgcgcgcgcacgtcagc
accggcggctacgccgtcgtcgtcgcacccggcaccggcaccgcgcatcgcgtggtggag
cggctggccgaatgcgacacccccgccgccatgctcgaatcgggtgccgcacccaaggcc
ggcgtggtcggtgtgctcaagggtccgctgcacgacggcgtcatcatccccggcgccacg
ttggtggtgatcaccgagaccgacctgaccggcagccgagtggcggccgtcgagggcaag
cgcctggcggccaagcggcgcaacaccgttgacccgctggcgctcaccgccggtgatctg
gtggtgcacgatcagcacggcatcggccggttcgtggagatggtcgagcgcaccgtcggc
ggcgcccgccgcgagtacctggtgctcgaatacgcgtcgagcaagcgcggcggcgggtcc
gacaagctgtatgtgccgatggattcactggaccagctgtcgcggtacgtcggcgggcag
gcgcccgcgctgagcaagctgggtggcagcgactggaccaacaccaagaccaaggcccgc
cgcgcggtgcgcgagatcgccggcgagctggtctcgctgtacgccaagcggcaggccagc
cccgggcacgcgttcgggccggacacgccctggcaggccgagatggaagacgcgttcggc
tacaccgagaccgtcgaccagctcaccgcgatcaccgaagtcaagggggatatggaaaag
ccgatcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatcgcg
gtgcgagcggcgttcaaggcggtccaggacggcaagcaggtcgccgtgctggtgcccacc
acgctgctggccgaccagcatctgcagaccttcaccgaccggatgaccgggttcccggtc
accgtcaagggcctgtcccggttcaccgacggggtggagtccaaggccgtgatcgagggc
ctggcggacggttcggtggacatggtgatcggcacgcaccggctgctgcagaccggggtg
cgctggaaggacctcggcctggtggtggtcgacgaggagcagcggttcggcgtcgagcac
aaggagcacatcaagtcgctgcgcacccacgtcgacgtgctgaccatgagcgccaccccg
atcccgcgcacgctggagatgagcctggccggcatccgggagatgtcgacgatcctgacg
ccgcccgaggagcggtatccggtgctgacctatgtcggcccgcacgatgacaagcaggtc
gcggccgccttgcggcgcgagctgctgcgcgacggacagatcttctacgtgcacaaccgg
gtcagctcgatcgaccgcacggcggcccggatccgcgagctggtgcccgaggcgcgggtc
gtcgtcgcgcacgggcagatgcccgaggaacggctggaacgcacggtccagggattctgg
aaccgcgaatacgacatcctggtgtgcaccacgatcgtggagaccgggctggacatctcc
aacgccaacacgctgatcgtcgagcgcgccgacaccttcggcctgtcgcagctgcaccag
ctgcgcggccgggtcggccgcagccgggagcgcggctacgcctatttcctgtatccgccg
cactcgccgctgaccgagacggcctacgaccggctggccaccatcgcgcagaacaacgag
ctgggcgcgggcatggccgtcgcaatgaaggacctcgaaatccgcggcgccggcaacgtg
ttgggcgtcgagcagtccgggcacgtcgccggggtcggcttcgacctgtacgtccggctg
gtgggcgaggcggtggaggcctaccgggcggccgccgacggccagaccgtcacgacggcc
gaggagcccaaggacgtgcggatcgacctgccggtcgatgcacacctgccgccggactac
atcgccagcgaccggctgcgcctggaggggtaccggaggctggccgcggcggcctccgac
ggtgagatcgacgccgtggtggaggaactcatcgaccggtacggggcgctgcccgaaccg
gccctgcgcctggtggcggtggcgcggctgcggttgctgtgccgcaccgccggcatcacc
gaggtgtcggcggcgtcggcgtcgaccgtgcggctctccccgatgacgctgccggactcg
gctcaggtgcggctcaagcggatgtacccggccgcgagctaccgtgccacgacgtccacc
gtgcaggttcccattccgcgggccggcggggtgggcgcgccgcgactgcgcgatgtcgag
ctggtgcagatggtcgccaacctggtgacggcactgcagggcaaaccgcagaccgacatt
ggtataacgagtgaactacctgcgtcgatggcaagcgaggagcgacaggcgcgatga
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