Manduca sexta (tobacco hornworm): 115440080
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Entry
115440080 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03013
Nucleocytoplasmic transport
msex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115440080
03015 mRNA surveillance pathway
115440080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115440080
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115440080
5.6.2.5 RNA 5'-3' helicase
115440080
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115440080
mRNA cycle factors
Common to processing body (P body) and stress granule
115440080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
UvrD-helicase
DEAD
Helicase_RecD
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_5
AAA_7
AAA
Motif
Other DBs
NCBI-GeneID:
115440080
NCBI-ProteinID:
XP_030020096
LinkDB
All DBs
Position
8:7778818..7790037
Genome browser
AA seq
1035 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADIIGADTQGSQYEFTDYTLPSQSQTQASQHDYGLSTSNQ
VNGLGRVDLTSKISNVTNAIAELQFEEEDEALYSSKELPEHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGEMQKPWSGVGHV
IKVPDNYGDDVGLELKNGAGAPLDCTSNFAVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGSPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVICTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPPRDPLAYVAPERAALLHGPVPPAAFPL
ARAAPAPPRRDPRRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESTAPECPSQPDGLLSQ
DSTYQGGFRARCSQY
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcctacggtccgagctcccaaactttaacatttttggatactgaagaa
gctgatattatcggtgcggatacacaaggatcgcaatatgagtttactgactacacgctt
ccttcgcaaagccaaacacaggcctcacaacatgactatggactgtcaacatcgaatcag
gtaaacggtttaggtcgtgtggatctcacatccaaaatatcgaatgtgactaacgctata
gcggagctacagtttgaagaggaagatgaggctttgtatagcagcaaggagcttccagag
catgcatgcaagtattgtggcattcacgacccagccactgtggtcatgtgcaacatctgc
aacaagtggttctgcaatggacgaggaaatacttccggatctcatattataaaccacttg
gtccgggcaaaacataaggaggctgctttacatcgtgatggccctctaggagagacattg
cttgagtgctactcttgtggtgctcgcaatgtctttgttcttggtttcatacctgccaag
gctgattctgtcgtggtcctattgtgccgccaaccttgtgcagctcaaagttcattgaaa
gacatgaattgggaccaagaacaatggaaaccactgatagctgaccgcgcgttcttgtct
tggttggtgaaggttccatcggaagctgaacaaatgagagctcgtcaggtgactcctcaa
caaataggacgcttagaagaactgtggcgggataatgttgatgctacgtttcaagattta
gaaaaacctggagtggacgaggaacctcatcaagtgttgttgagatatgaagatggttat
caatatcaaaacatctttggtcccttagtcaagctggaagctgattatgacaagcgtctg
aaagagtctcagactcaagagggtattgaagtccgctgggatgttggtctcaacaagaag
acaattgcgtacttcacattggccaaaactgatagtgacatgaaactcatgcatggagat
gagctaagattgagatatgttggtgaaatgcagaagccctggtctggcgttggtcacgtg
atcaaggtgcctgataactacggagacgatgtcggtcttgagctcaaaaacggcgccgga
gcaccgctcgactgcacctctaacttcgcagtcgatttcatctggaagagcacgtcattc
gacagaatgcagttggctctgcgtaagtttgctgtggacgattcatctgtatcgggctac
atctatcgtcgcttattaggtcatgaagtcgaagaagtgctgttccgcgtacacttgcca
aagcatttcagtgcgcctaatctacctgatctcaatcgctctcaggtgtatgcagttaaa
catgcccttcaacgccctctctcgctgatccaagggcctcctggcactggcaaaacggtt
acttccgcaactatcgtttaccaattggtgaggcaaaatggaagtcctgtcctcgtttgt
gcaccgtctaatactgccgtcgaccagctgacggaaaaaatccacagaacagggttgaaa
gtagtgaggttatgtgccaagtcacgtgaagcaatggaatcctcagtttctttcttggca
ctacacgagcaagcccgcgcccttggctcagcagacagcgaactgcgaaagctaaccaga
ctaaaggaagaagctggggagttgtctgcagcagatgagagaagataccgtgctctacgt
cgcgcagcagagaggcgtctattggatgctgcagatgtcatttgtaccacctgtgtgggt
gccggagaccctagagttgctcgtatgcgtttccaatctatccttatcgatgaaggtatg
caatctacggagcctgaatgcatggtccccgtggtactgggggcgagacaacttatcctc
gtcggcgaccactgccaactcggccctgttgtgatgtgcaagaaagctgccaaggctggt
cttagccaaagcctttttgagcgtctggtcgttctgggtattcgcccattccgtcttgaa
gttcaataccgtatgcatccagaactgtcgcgattcccgtccgatttcttttatgaaggg
tcattgcaaaacggagtgagcgccgaggagcgacgtcttcataagattgattttccatgg
ccaagacccgatcggcctatgttcttctatgtaacacagggccaggaagaaattgccggg
tctggcacatcatacctaaataggactgaagcagccaacgtagagaaattgacgacgcgt
ttccttaaagcaggcgtccgtccagaacagataggcatcatcacgccgtatgagggccaa
cgttcttacctggtccagcatatgcaataccaagggagcctgcacgcaaaattgtatcaa
gaaatcgaagtcgccagcgtcgacgcattccaaggcagagaaaaagatataatcataatg
tcttgtgtacgatccaacgagcatcagggcatcggttttctcagtgatccgaggcgtctg
aacgtcgcgctcactcgcgccaagtacggtctcatcgtcgtcggtaacccgaaagtgctg
agcaagcaacctttatggaaccatctgttggccttctacaaagagcggagagtgctaact
gagggcccgctgtccaacttgaaggagtctgcgatccaattcgccaaaccaaagaagctg
gtgaacgcgcagaaccccggctcgcacttcatgtcgacgtcgatgttcgacgcgcgcgag
gcgatggtgccgggctcggtgtacgaccgcgcgcggccgccgcgcgacccgctggcgtac
gtggcgccggagcgcgcggcgctgctgcacgggcccgtgccgcccgccgccttcccgctg
gcgcgcgccgcgcccgccccgccgcgccgcgacccgcgccgccgcccgccgcgcctgtcg
caggagccgctgtcgcagcagccgccgctgtcgctatcgcagggcgcgtcgcagccagac
ttcagccaggagtcgacggcgccggagtgtccgtcgcagccggacggtctgctgtcgcag
gactcgacgtaccagggcgggttccgggcgcggtgcagccagtactga
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