Manduca sexta (tobacco hornworm): 115441343
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Entry
115441343 CDS
T07401
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
msex
Manduca sexta (tobacco hornworm)
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msex03041
]
115441343
03016 Transfer RNA biogenesis [BR:
msex03016
]
115441343
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115441343
Spliceosome [BR:
msex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115441343
Transfer RNA biogenesis [BR:
msex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115441343
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
PGK
Motif
Other DBs
NCBI-GeneID:
115441343
NCBI-ProteinID:
XP_030021962
LinkDB
All DBs
Position
9:6797681..6804654
Genome browser
AA seq
728 aa
AA seq
DB search
MTAFEEFGVLSELGKATEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDMQEGKTGKVLQHVATEWTMSFFDRTDALAVTPDGLRCQSRDAKAWHGCRA
TKGVHSKGAYYYEATVTDEGLCRVGWSTQAARLDLGTDRFGYGFGGTGKKSNSKQFDDYG
TAFGMNDVIGCMLNLNNGEIRYTKNGEDLGVAFKIEQPRRSECYFPAIVLKNAEMSFNFG
ATPFKYSPPSEYIAICQAPKENVKLNAISAGAGAEAKPVNNAPQAIIIEPSRELAEQTCT
QITKFKKYLENPTVRELLVVGGINVKDQINQLNSGVDIVVGTPGRLEDLIQGGYLALTHC
RFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFEVKKMAEKLMH
FPTWVDLKGEDAVPETVHHVVVNVDPQKDRLWETLRKYLQTDGVHAKDNIRSGNTTPETL
SEAVKILKGEYCIRAIKEHKMDRAIIFCRTKLDCDNLERYLKSYGNEFSCVCLHGDRKPA
ERKANLEKFKQNQVKFLICTDVAARGIDISGLPFMINVTLPDDKSNYVHRIGRVGRAERM
GLAISLVSTVPEKVWYHGEWCSSRGRNCWNTNLIDDRPKGCCMWYNEPQYLADIEDHLNI
TIQQVEPDMKVPSNEFDGKVVYGEKRKQVGTGYQDHVSQMAPVVKSLQELESQAQLYYLK
LHHNVTIA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgacggctttcgaagaattcggcgtcctctccgagctggggaaggcgaccgaagaaatg
gattggacattaccaacagatgtccaggccgaagcaattcctctcattttgggtggtggt
gacgtgcttatggctgctgaaactggtagtggaaagaccggcgcattttgtttacctata
ttacaaatcgtatgggagacgttaaaggacatgcaagaaggtaaaactggaaaggtcctg
cagcatgttgcgacagagtggacgatgtcgttctttgaccgaacggatgcgctagctgtg
actccagatggtctgaggtgccagtcacgtgacgcgaaggcatggcacggctgcagagct
acgaaaggcgtccacagcaagggagcttactattacgaagccactgtaaccgatgagggt
ttgtgccgtgttggttggtctacacaagctgcaaggcttgatcttggaacagacagattt
ggttatggttttggtggtactggcaagaagtccaattcaaaacaatttgatgattatggt
acagcatttggtatgaatgatgttattggttgcatgcttaatttaaacaatggtgagatc
cgttacacaaagaatggagaagatctaggagtagcattcaagattgagcaacctaggcgg
tctgaatgttatttcccagccattgtgctgaaaaatgctgaaatgagtttcaactttggt
gcaactccttttaagtattcaccaccaagtgaatacatagctatttgtcaagcaccaaag
gagaatgtgaaactcaatgcaatttctgctggggctggtgctgaggctaaaccagtaaac
aatgctccacaagcaatcatcattgagccgtcgcgcgagttagcggaacaaacttgcaca
caaataacaaagtttaagaaatacctggagaatcctacggtgcgcgagttactcgtcgtg
ggaggtattaacgtgaaggatcagatcaatcagctcaactccggagtagacatagttgtc
ggcacgcctggtcgacttgaagatcttatacagggtggatatttggctctcacccattgc
cggttctttgtgctcgacgaagccgacggcttactcaaagctggatacggagaactgatt
gaacgccttcatcgtcaaataccaaagattacttcggacggccgccgtcttcagatggtg
gtgtgttcggcgacactccacgcgttcgaagttaagaaaatggcggagaaattaatgcat
ttcccaacatgggtggacttaaaaggagaagacgcggtacccgaaacggtgcaccacgtt
gtggtgaatgtggacccgcaaaaggatcgtctgtgggagacgttgcgcaagtacctgcaa
accgacggcgtgcacgctaaagataacattcgaagcggtaataccacgccagagacgttg
tcggaagccgtgaagatcctcaagggagaatactgcatccgcgctattaaagaacataag
atggatagagccataatattctgtcgcacgaagctggattgtgacaacctggaacgctat
ttgaagtcatacggcaatgagttctcgtgcgtgtgcctgcacggcgacaggaagccggcc
gagcgtaaggccaacttggaaaagttcaagcagaaccaggtcaagttcctcatttgcacc
gacgtcgctgccaggggtatcgatatatcgggactgccgtttatgattaacgtcaccctg
ccggacgataaatcaaactacgtgcatcgcatcggtcgtgtcggccgagcggaacgcatg
gggctcgccatcagtcttgtctctaccgtgccggagaaggtgtggtaccacggcgagtgg
tgctcgtcgcgcggccgcaactgctggaacaccaacctcatcgacgacaggcccaagggc
tgctgcatgtggtacaacgaaccccagtatctggcggacatagaggaccacttgaacata
acgatccagcaggtcgagccagacatgaaggttccgagtaatgagttcgacggtaaagtt
gtgtacggtgaaaagaggaaacaagtcggaaccggatatcaggatcacgtaagccaaatg
gcgcccgtagtgaagtcgctacaagagctggaatcgcaagcgcaactctactatctcaag
ctgcatcataatgttaccatagcataa
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