Manduca sexta (tobacco hornworm): 115441420
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Entry
115441420 CDS
T07401
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13191
RNA-binding protein 16
Organism
msex
Manduca sexta (tobacco hornworm)
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msex03021
]
115441420
03041 Spliceosome [BR:
msex03041
]
115441420
Transcription machinery [BR:
msex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115441420
Spliceosome [BR:
msex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
115441420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
RRM_5
Motif
Other DBs
NCBI-GeneID:
115441420
NCBI-ProteinID:
XP_037296222
LinkDB
All DBs
Position
19:1346182..1370456
Genome browser
AA seq
1533 aa
AA seq
DB search
MDLPEVKAFNAELSGLYDNKPPISKAKMSAITRGAIKAIKVYKHVVHSVEKFIQKCKPEY
KVPGLYVIDSIVRQSRHQFGQDKDVFAPRFAKNMQQTFANLFRCPPEDKRNIIRVLNLWQ
KNNVFSPQVIQPLLDMADPNHPLHQEIQQQQNNTANGSSLNISHNTMDGKSSPGPAPLHS
PHTSSPMGDQFQDQPSGQGMKFNRKLLNDFEYESEDDGPAEAAAHSSTHSTHSTQSAHSA
QAPPQHPQHTQHAPHNNTLGQHPPQHNTADALGSILTNPEIMRQLQSLQAQMQLMTGMQI
PNLMPMMTDMQLQQTQNQNPFLTSQPEQQKEAKDDIANESDIEFVETGPQVIEIPDANDS
RSPSPRSRRARSRSKSPRRRRRSRSRSARRRRDRDRDRDKDREKDREKSYKEREAEREKQ
REREKKGLPPIKKENLSVCSTTLWVGHLSKLATAEELSDLFGGVGGVASIDLVPPRGCAF
VVMERRRDAARALRHLHKHKLHSKEITVAWAPGRGVKGREWKDHWEGEVGVSYLPWGALH
QRWLLGALSLDALEDGGAVDEDTLPPWLPPRILPKSMMEIPLLSGMPPVSGPGMLPAMPP
GALATMPHSALPAMPPGTMATLPPGVAGVAGVVPTSVAGAGGAGAALSSALGAAPAVSVA
VPRLPPPGMTAALPPGLAAGLPPGIRPPSLPAGVPGMVGGFLVGMGGLVGGVLPLHAHTQ
HAAHAQLLSHAHHVPPQHAAEPAQASQAASAAPVPPGAGPGAGSGAAAGALAGADDAMEL
DNDDAPPPPALLPDQIQALLSKPPPNFNSAEPPPGFNASEPPPFNAQAQSEDKEDDRKND
RDRDRRDRDRDRDRRDRDRRDRDRRDRDRGRDRDRERDDRRDRDRDRGRERRDRDRDRDR
DRERFGSRENNREISRDKSPRNTANVDNEKSLQERLWEMANGKPNPQGDKHEEFPEERDQ
QRDDTRERPPPLIDRMPMRHDGPPPAGLDGEGEAAGGAGAVGWTQLPPPRHPPPHMAPHF
RAELRMRGPPRQAMAGPWMDGPGPGPGPGPVPASFGPRFNGMGPPFNRPPFERPPFEGGP
LFEGPPRFERPPFNRMPFEMNRPPFDGPRPPFDGPRPQFDGPRPPFDGPRPPFDGPRPHF
DGPRPPFDGPRPFDGPPFDGDRPFDGPPRYDGPPEYYDRNNRRFDDREQYNDRGWNADRD
RDRDWDRRNDWEDRRRDRRPREHDDRFRDRNDRRRNFDDRSGERSGGDRPGGDRSSGDRP
SADRASGDRPGGDRPVGDRPGADRPGGDRPGSDRPGVDRPGGERTSGDRRSAGPSAREER
NPRRDKDRKSRWGAADEAVQIQQENVPEKANNESAENKEIAMEIEQKVNDNADAGRDEQT
TAAPESKEAAEEPKESAEISRPTEAKEPFVDEPEQKERESHAPQEYESAPQEVESAQQEF
VPTSRENEPTEAPAANDPPPDLYDAHEAIDTSFSQPTPAEEVYSKPVEKESTSDTPAENA
DIFSQEPMEKTEPVPEKEGTETTSTEEMKEGAA
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atggatttgccagaagtgaaagcgttcaatgcggagttatccggattgtacgacaacaaa
ccacctatatcaaaggcgaagatgagtgctatcaccagaggtgctataaaagccataaag
gtctacaagcatgtcgtgcacagtgtggaaaagtttatacagaagtgcaagccagagtac
aaagtgcctggtctttatgtgatagattctatagtgcgtcagtcacgacatcagttcggg
caagacaaggatgtgttcgctccgcgctttgcgaagaatatgcagcaaacgttcgctaac
ttgttcagatgtccgcctgaagataagaggaacataatccgagtgctgaacctgtggcag
aagaacaatgtgtttagtcctcaagtcatacagccgttgctggacatggctgaccccaac
catcccctgcatcaggagatacagcaacagcagaacaacactgccaatgggagcagtcta
aacataagtcacaatacaatggacgggaagtcttcgcctggaccagcgccccttcactca
ccacacacatcctcacccatgggggatcagttccaggaccagccgtccgggcaaggcatg
aagttcaaccgtaagctactgaacgactttgagtacgagagcgaggatgacgggccggca
gaggcggcagcgcactcctccacgcactccacacactccacccagtccgcccactctgcg
caggcgccgccgcaacacccgcagcacacgcaacacgcgccacacaacaatacgctcggg
cagcacccgccgcaacacaataccgcggacgcgctcggcagcatactgacaaaccccgag
attatgagacaactgcagagcttgcaggcgcagatgcaactcatgactggtatgcagata
cctaacctaatgcccatgatgacagacatgcaattgcaacaaacgcaaaatcaaaaccca
tttttgacatcacaaccggagcaacagaaggaggccaaagatgacatagccaatgaatct
gacatcgagtttgtggagacaggtccgcaagttatagaaatacctgacgctaatgattca
aggagcccgtcgccgcgcagccggcgcgcgcgctcgcgctccaagtcgccgcgccgccgc
cgccgctcgcgctcgcgcagcgcgcgccgccgccgcgaccgcgaccgggatagagataaa
gacagagaaaaggatagggaaaaatcgtacaaagagcgagaagcggaaagagaaaaacag
agggagcgagagaaaaaaggactgccgccgatcaagaaagaaaacttaagtgtgtgcagc
acgaccctgtgggtgggccacctgtcgaagctggccacggcggaggagctgtcggacctg
ttcggcggcgtgggcggcgtggccagcatcgacctcgtgccgccgcgcggctgcgccttc
gtggtcatggagcgccgccgcgacgccgcgcgggccctgcgacatctgcacaaacacaag
ctgcactccaaggagataacggtggcgtgggcgccggggcgcggcgtgaagggccgcgag
tggaaggaccactgggagggcgaggtgggcgtgtcgtacctgccgtggggcgcgctgcac
cagcgctggctgctcggcgcgctgtcgctcgacgcgctcgaggacggcggcgccgtcgac
gaggacacgctgccgccctggctgccgccgcgcatattgccgaaaagcatgatggagatc
ccgttgttgtcgggcatgccgccggtgtcggggcccggcatgttgcccgccatgccgccg
ggcgcgctggccacgatgccgcacagcgctctgccggccatgccgcccggcaccatggcc
actctacctccaggcgtggcgggcgtggcgggcgtggtgccgacgagcgtggcgggcgcg
ggcggcgcgggcgcggcgctgtcgagcgcgctgggcgccgcgcccgccgtgtccgtcgcc
gtgccgagactgccgccgccggggatgacggcggcactaccaccgggcttggctgcaggt
ttaccaccaggcatcagaccgcctagcttaccagcaggtgttccaggtatggtaggcgga
ttcctagtgggtatgggcgggctggtggggggcgtgctgcctctacacgcgcacacgcag
cacgccgcacacgcacagctgctgtcgcatgcacaccacgtgcctccgcagcacgcggct
gagccggcgcaggcgagtcaggcggcgagcgcggcgccggtgccgccgggcgcggggccg
ggcgcgggctccggcgcggcggcgggcgcgctggcgggcgccgacgacgccatggagctc
gacaacgacgacgcgccgccgccgcccgcgctgctgcccgaccagattcaagctcttcta
tcaaagcctccgccaaacttcaactctgccgagccgccgcccggtttcaacgcgtcggaa
ccacccccattcaatgcgcaagcgcagtccgaggacaaggaagacgatagaaagaatgat
cgcgaccgagacagacgggatcgcgatcgggacagggacaggcgtgaccgggataggaga
gatcgagataggagggacagagatcgaggaagagatagagatcgggaacgagatgacagg
agagatcgcgacagagaccgcggccgcgagagacgggacagagatcgcgaccgggacagg
gatagagaacgattcggatctagggaaaataatcgggaaatatcgcgcgataaatcgcca
cgcaacactgccaacgtcgacaacgagaaatcccttcaagagaggctgtgggagatggcg
aacggcaagcccaacccgcagggagacaagcacgaggagttccctgaggagagggaccag
cagcgggatgatacgagagagagacccccgccgctgatagaccgcatgccgatgaggcac
gacggccctccacctgcaggcttggatggtgaaggcgaggcggcaggcggcgcgggcgcg
gtgggctggacgcagctgccgccgccgcgacacccgccgccgcacatggcgccgcacttc
cgcgccgaattgagaatgagagggccgccaaggcaagcgatggcagggccgtggatggac
gggccggggccgggaccagggcctgggccagtaccggcatcgtttggacctagattcaac
ggcatgggaccgcccttcaaccggccgccgtttgagaggccgccattcgaaggcggaccc
ttgttcgaaggaccgccgaggttcgagcgaccaccgttcaacagaatgccatttgaaatg
aatcgcccgccgtttgacggaccgaggccgccatttgatgggccaagaccgcaatttgat
gggcccagaccgccattcgatggacctcgaccgccatttgatggacctagacctcatttc
gacggaccgagacctccgtttgatggaccccgacccttcgacggcccaccgttcgacggt
gaccggccattcgatggcccgccacgatatgacggcccaccagaatactacgatagaaat
aacaggagattcgacgacagggagcagtataatgacagagggtggaacgctgaccgagat
agagatcgagactgggaccggagaaacgactgggaggataggaggagagataggagaccc
agagagcacgacgatagatttagggacagaaatgatcgcaggagaaactttgatgacagg
tctggagagagatcaggtggagatagaccgggtggtgatcgatctagtggcgatagacca
agtgcagatagggcgagcggggatagacccggtggcgacagaccagttggtgatagacca
ggtgctgacagaccaggtggtgacagacccggtagtgatagaccaggtgttgacagacca
ggtggagaaagaacaagcggagacagaaggtctgctggcccttcagctagggaggaacgc
aatccgaggcgagacaaagacaggaaatcgaggtggggcgccgctgacgaggcggtacag
atacaacaggagaacgtgcctgaaaaagcgaacaatgagagtgcagagaacaaagaaatt
gccatggaaatcgaacaaaaagtcaatgacaatgccgacgctggtcgtgacgaacaaact
acggccgcaccagagagtaaagaggccgccgaagagccaaaagaatctgcagaaatatcg
cgacctactgaagcgaaggaaccattcgttgatgaaccagaacagaaagagcgagagagt
catgcaccacaggagtacgaatcagccccacaggaggtcgaatcagcgcaacaggagttt
gtacctacatctcgggagaacgaaccaactgaagctcctgcagccaacgaccccccaccc
gacttgtatgacgctcacgaagcgatagacacgagtttttcacaaccaacgccagctgaa
gaagtatactcaaaacctgtcgaaaaagaatcgacatcggatacaccagctgaaaacgcg
gatatattcagtcaggagccgatggagaagacggaaccagtgccagaaaaggaaggtacc
gaaacaacgagtacagaagaaatgaaagaaggggcagcttga
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integrated database retrieval system
