Manduca sexta (tobacco hornworm): 115442175
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Entry
115442175 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115442175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msex03400
]
115442175
DNA repair and recombination proteins [BR:
msex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
115442175
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
115442175
NCBI-ProteinID:
XP_037302473
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Position
6:7255196..7268872
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AA seq
1134 aa
AA seq
DB search
MSKRNSTGGGNTLFNYFSKTPPANKKVKSKIDSEDSPKLESKSIDKEIKNENKKRERQPT
PSPKVNDAHSDDEELPLVPKKKKRIRLNPLDSDDSDVENKVDNKIETPKNDKKSALEKKL
QDSFKYEPNQSPKSSKKEKPLPTTSSNGPPPTPSKNEEKATVSDEGNWVHCKLAWLKADK
IRDAMQRRPDHPDYDATTLYVPPDFLRKQTPAHRQWWEMKSSHYDCVLFFKVGKFYELYH
MDAAVGVNELGFSYMKGDFAHSGFPESAYARMSSTLVSKGFKVARVEQTETPEMMQDRCK
KAGLKTSDKVVRREICQVTLRGTQVCGLQDAGPCEASAAFMMAIAEEDNNGCSSYGVCFV
DTSIGLFHLGQFQDDKHSSRLLTTLAHYPPALVIYDRKSTTARTSKLLSTHCYNARREAL
NMWAPDKTLKILADKYYRTNADGDWPEGIKEFLHEGDALGLTPAANCFLAVKALGGCVAY
LTDCLLDIQVLGMSQFTHYAPPDVLNKTLSQEAKDTNRWEGGNTMVLDAITLRNLRIVQD
EGCLYERLNFCSTAMGKRLLYQWVCAPSCNLKVIEERQQAVKALFENVEICQEAKNILTT
LPDLERLLAKVHALGNLKRSKQHPDSRAIFYEEKTYSKRKVLDFISVLNGFTSALKLVQL
FGDVDSILLKTITQFAPDGKYPDYKDTLKFFXGKFFYWFEAFNQKEAEKEGRILPGEGVD
QEYDNTIQLIKEIETELKDYLAEQEKYFKCRISYVGSDKKRYQLEVPLSAAGRAGSEYHM
ESARKGFKRFSTDETKDLLARMIAAEEQKTNVLKDLSRRIFEKFSSNYNQWETAVQCLAT
LDILLAFTEFARQQTGDVCLPQITYDKEEKPYINITEGRHPCISNVTDFIPNDTRLGSAG
ANLLLLTGPNMGGKSTLMRQVGLLTVLAHLGSYVPAQECRLSLVDRIFTRLGASDDILAG
QSTFLVEMNETAAIVKHATVHSLVLLDELGRGTSTYDGTALASGVCVELARRACRVLFST
HYHALVHHLAHHPRVLLGHMACMVETDESTPDSEDHIPEETITFLYKLSPGACPKSYGFN
AARLAGIPKEITRKAHLISKNLEKEATCARAFRDLMKLGDNAQGLRELLGSLKI
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagaaatagtactggaggtggaaacactctatttaactatttttctaaaaca
ccgcctgcgaataaaaaggtaaaaagtaaaatagattctgaagacagtcccaaactcgaa
tcgaaaagcattgataaagaaataaaaaatgaaaataaaaagcgtgaaaggcaaccaaca
ccatccccaaaggtgaatgatgctcacagtgatgatgaagaactcccactagttcccaaa
aagaaaaaaagaatcagacttaaccctctggactctgatgattccgatgtagaaaacaaa
gtagataataaaatagaaacccccaaaaatgataaaaaatcagcattggagaaaaaacta
caggacagttttaaatacgaaccaaatcaatcacctaaaagttcaaagaaagaaaagcct
ctcccaactacgtctagtaatgggcctccaccaaccccatctaaaaatgaagaaaaagca
acagtatctgatgagggtaattgggtgcattgcaaactcgcttggttgaaggctgacaaa
attagagatgcaatgcagaggagaccagatcaccctgattacgatgcaaccacattgtat
gtaccacctgacttcttgagaaaacaaacacctgcgcatcgtcagtggtgggagatgaag
tcgtcccattatgattgtgtgctgttctttaaagtcggcaagttttatgaactgtaccac
atggacgcagctgtgggtgtgaatgaacttggattctcttatatgaagggtgactttgca
cattctggttttcctgaaagcgcatacgctagaatgtcgtcgactttagtctcaaagggt
ttcaaagtggctagagtggaacaaacggagactcctgagatgatgcaagataggtgtaaa
aaagcgggtctaaaaacttcggacaaggtcgtccgccgtgaaatatgccaggtgacgctg
cgtggcacgcaggtgtgcgggctgcaggacgcgggaccttgcgaggccagcgctgccttc
atgatggccattgctgaagaggacaacaatggttgcagttcttatggagtttgctttgtc
gacacgtcgatcggattatttcacctcggtcagttccaggacgacaaacattcttccaga
ctgctcaccacattggcgcattacccgcccgccttggttatatacgaccgtaaatctaca
acggcgcgtacaagtaaactgctttcaacgcattgttataacgcgcgaagggaagcttta
aacatgtgggctccggacaagacgctcaagatcctcgcggacaagtattataggacgaat
gcggacggcgactggccggaggggatcaaagagtttttacacgaaggtgacgcattaggc
cttacgccagcagctaattgttttctagcagtaaaagcactagggggttgcgtggcctac
ctcaccgactgcctattagacatacaagtattaggcatgtctcagttcacacactatgca
ccacctgatgtgctaaacaagaccttatctcaagaggcaaaggatacaaatcgctgggaa
ggcggcaacaccatggttctggatgccattaccctgaggaatttgaggatagtgcaagat
gaagggtgtttgtatgaaaggttgaatttctgttcaacagctatgggaaagagattatta
taccaatgggtttgcgcgccaagttgtaacctcaaagttattgaagaacgtcaacaggca
gtgaaagcattgttcgaaaatgttgagatatgtcaggaagccaagaatatattgactaca
ttgccagatttggaacggcttttggcgaaagtccacgcactaggcaacctaaaaagatcg
aaacagcacccggactctcgagccatcttctatgaagaaaagacttattccaagcggaaa
gttctcgactttatatcagtgctcaacgggttcacctctgcgttgaaacttgtccagttg
tttggggatgtggattcgattctgctgaagaccatcacgcagttcgcccccgatggaaag
taccctgattataaggatactctaaagtttttttaaggtaaatttttttattggtttgaa
gcatttaaccagaaagaggcagagaaagaaggacgtatacttcccggggaaggagtcgac
caggaatacgataatactatacaacttataaaggagattgaaacagaattaaaagattat
ttggctgaacaagagaaatattttaaatgtcgtatctcgtacgtgggttcggacaagaag
cgctaccagctggaggtgccgctgagcgcggcgggtagggcgggctccgagtatcacatg
gaaagcgcacgtaaaggattcaagaggttctccactgatgagactaaggacttactagcg
cgcatgatagcggcagaagaacaaaagacgaacgtgttgaaagatctgagccgtagaata
ttcgagaagttctcgtccaactacaaccagtgggagacggccgtgcagtgcctcgctaca
ctggacatactgctagcgttcacagagttcgcgcgacagcagaccggagacgtgtgcctg
ccgcagattacttatgataaagaagagaagccatacatcaacataacagagggtcgtcac
ccctgcatatcgaacgtgacggacttcatcccgaacgacacgaggctcggcagcgccggc
gccaacctgctgctcctcaccgggcccaacatgggcggcaagtccacactcatgcggcaa
gtggggctgctcaccgtgcttgctcatttgggtagctatgtaccagcacaagagtgccgt
ctgagcctagtggaccggatcttcactcgtctgggagcatcggacgacatcctggcggga
cagtccacgttcctagttgagatgaacgagacagccgctatagtgaaacacgctactgtg
cattcactggtgctgcttgatgaattagggcgcggcacgtcgacgtacgacggcacggcg
ctggcgtcgggcgtgtgcgtggagctggcgcggcgcgcgtgccgcgtgctcttctccacg
cactaccacgcgctcgtgcaccacctcgcgcaccacccgcgcgtgctgctcggacatatg
gcgtgcatggtagaaacagacgaatcaacaccggacagcgaagaccacataccagaagag
accataacattcctgtacaaactcagtccgggcgcgtgtcccaagtcctatggattcaac
gcggcccgactcgccggcattcctaaagaaatcacgcgcaaggcacatctcatatccaag
aatttggagaaggaagccacttgtgcgagggcgtttagagatcttatgaaattgggagat
aatgctcaaggattgagggaattgttaggttccttaaaaatttga
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