Manduca sexta (tobacco hornworm): 115442218
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Entry
115442218 CDS
T07401
Name
(RefSeq) RNA-binding protein squid isoform X1
KO
K03102
squid
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex04320
Dorso-ventral axis formation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09150 Organismal Systems
09158 Development and regeneration
04320 Dorso-ventral axis formation
115442218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115442218
03041 Spliceosome [BR:
msex03041
]
115442218
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
115442218
Spliceosome [BR:
msex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
hnRNP proteins
115442218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
SET1_RBD
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
115442218
NCBI-ProteinID:
XP_030023078
LinkDB
All DBs
Position
21:14248141..14254656
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AA seq
326 aa
AA seq
DB search
MANNDNFAQDITTENQLNGNAENGGGDGQEHNSAEAPGRDDDRKLFVGGLSWETTDKELR
DHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMSVGEHTINNKKVDPKKAKA
RHGKIFVGGLSSEISDDEIKNFFGNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNEL
LKTPKQTIAGKEVDVKRATPKPDGPGGMGGRGGRGGRGTRGGRGGRGGYGGQPWGNQGYG
GYGYGQGGYGGGYDGYGYGGYGYDGYGGYGGYDYSGYPNYDYGGYGGYEGGYGARPAPRG
KAGYQGGKQRGGGGGGGRANQRHQPY
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggccaataacgacaattttgcacaagatattaccaccgaaaatcaactaaatggaaat
gcagaaaacggtggaggagatggacaagaacataacagtgccgaagcccccggacgcgat
gacgacagaaaactattcgtgggtggcctgagctgggagaccacagacaaggaattgcgt
gaccacttcagcgcttacggcgagatcgagagcatcaatgttaagacagatcccaacact
ggccggtcgcggggtttcgcgttcattgtgtttaaggcgccggactccatcgacaaggtg
atgtctgtgggcgagcacaccatcaacaacaaaaaggtggaccccaagaaggcgaaggcg
cgacacggcaagatcttcgtcggcggtctcagcagtgaaatatctgatgatgagatcaag
aacttctttggaaactttggcaatataattgaagttgaaatgccatttgataagacaaag
aaccagaggaagggattctgtttcatcacatttgagtctgagcaagtggtcaatgaactg
ttgaagacaccaaaacagaccattgctggcaaggaggtggacgttaagagagcgacgccg
aagccggacggtcccggaggcatgggcgggcgaggcggtcgcgggggcagaggcacgcgt
ggcggacgcggcggccgcggcgggtacggcggccagccgtggggcaaccagggctacggc
ggctacggctacggccagggtggctatggcggtggctacgacggctacggctacggtggc
tacggatacgacggctacgggggatacggcggatacgattactccggataccccaattac
gactacggcgggtacggagggtacgagggcgggtacggcgcacgaccggctccgcgcggg
aaagcagggtaccagggcggcaagcagcgcggcggcggcggtggcggcggccgtgccaac
cagaggcaccaaccctactag
DBGET
integrated database retrieval system
