Manduca sexta (tobacco hornworm): 115442599
Help
Entry
115442599 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115442599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msex03041
]
115442599
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115442599
Spliceosome [BR:
msex03041
]
Complex C
Other components
Step II factors
115442599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
Flavi_DEAD
nSTAND3
AAA_30
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
115442599
NCBI-ProteinID:
XP_030023536
LinkDB
All DBs
Position
17:complement(13600998..13608765)
Genome browser
AA seq
1269 aa
AA seq
DB search
MDEVAKLEHLSLVSKVCTELDNNLGLNDKDLAEFIIDLADKNPTFEDFKKALLENGAEFS
DSFMTNLLRIIQHMKPVGNTTENVPEKENKNPLANKFPGLAIPNEKPRKLSTDDSSEDEE
DTKKRITSKDIFKEELTKPAAGDNVVDQAMAELEALAPSNAGVKKESPKEIKKRERSRSR
DHKDTRHRRRDDSRDRKKRSRSRDRRSRSRDRQSPSRDRRGSRDRDRGRDRDRDKGRDRD
NDRDKERRRRSRSRHRHRSRSRDRHRRSRSRGRRSRSRGKRSHSREREDRYGDFSKKMRK
KSPEIEMSDDPEPGKIYNGRVANIVPFGCFVQIEGVKKRWEGLVHISQLRSEGRVTNVSD
VVNRGDKVKIKVLSVTGQKVSLTMKDVCQETGKDLNPTSHAHLEAEREGRNPDRPPPAAT
VLAGLQGGLDPDEDSSRKRVTRISSPERWEIKQMISSGVIDKSELPDFDDETGLLPKDED
GEADIEIELVEEEPPFLQGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMI
QREQEMESLPTGLNKNWIDPLPESDGRTLAANMRGTGITPQDLPEWKKHVIGGKKSSFGK
KTNLSLLEQRQSLPIYKLRDELTKAVADNQILIVIGETGSGKTTQITQYLAECGLTARGK
IACTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPDTVIKYMTDGMLLRECLM
DLDLNSYSVIMLDEAHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEA
PIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEI
LYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIY
YVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEM
LPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIMALEQLHSLSALDSEGL
LTRLGRRMAEFPLEPNLSKILIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKK
AKFNQPEGDHLTLLAVYNSWKNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLD
VVSAGKNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYH
ELVQTTKEYMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWR
ISRVRRRRN
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagtagcgaaattagaacatttatcgcttgtttccaaagtatgtaccgagttg
gacaacaatttggggctaaacgataaagatttagccgaatttatcatagatctcgctgac
aagaatccaacttttgaagacttcaaaaaggctttgctcgaaaatggagctgaattctcg
gactccttcatgactaatttgctgcgtatcatacagcacatgaaacctgttggtaataca
acagaaaatgtaccagaaaaagaaaataaaaatcctttagctaacaaatttccagggctt
gctataccaaatgagaagccccgtaaactgtcaacagacgatagtagtgaagacgaggaa
gatacgaagaaaaggatcacatccaaagacattttcaaggaagaactaactaaacctgca
gcaggtgataatgtagttgatcaagctatggctgaattggaggctcttgcgccttcaaat
gctggtgtgaagaaagagtcgccgaaagagattaagaagcgtgaacggagcaggagtagg
gaccataaagacactagacatcggaggagagatgattctagagatagaaaaaagaggagt
agaagtagggataggcgtagtaggagtagagatagacagagtcctagtagagatcgcaga
ggtagtagggatagagatagaggaagagatagggacagggataaaggtagagatagagat
aatgatagggataaagaaagaagaagaagatcaagaagtcgccatcgccacagatccagg
tcaagagacagacacaggaggtccagatcaagaggcagaagatctaggtctagaggtaaa
cgatcacactcccgtgaaagggaggatagatatggtgatttcagcaaaaagatgaggaag
aaaagtcctgaaattgagatgagtgatgatcctgagccaggaaaaatatacaatggccgt
gtagcaaacattgtaccgtttggttgctttgttcaaattgaaggggtaaaaaagagatgg
gagggtcttgtccacatctcacaactcagatctgagggcagggtcactaatgtgtctgat
gtggtaaacagaggggataaagtaaagatcaaagttttgtctgtaacagggcaaaaggta
tcacttacaatgaaggatgtgtgtcaggaaaccggaaaagatctgaatccaacatcacat
gcacatttggaggctgaacgtgaaggtcgtaacccagaccgtcctccaccagccgctacg
gtgttggctggactgcaaggcggtctcgatcctgatgaagactctagcaggaagagagtt
acaaggatctcaagtcctgaaagatgggagatcaagcagatgatatcatcaggtgtcata
gacaagagcgagctgccagacttcgacgacgagaccggactcctcccgaaagacgaggat
ggagaggctgacattgaaatagagctggtagaagaggagccgccgttcctacagggccac
gggcgggcactccacgacctgtcacctgtgagaatcgtgaagaacccagacggatcactc
gctcaggcggctatgatgcagtccgcgttggcgaaggaaagaagagaacagaagatgata
caaagagagcaggagatggagagtctgccgacaggtctaaacaagaactggatagatccc
ctgccagagagcgatggtaggaccctcgcagccaacatgagaggcaccggcatcactcca
caggacttgcccgagtggaagaagcacgttatcggcggcaaaaagtcgtccttcggcaag
aagacgaacctgtcgctcttggagcagagacagtcactgcctatctacaagttgagagat
gaattgactaaggctgtagcagacaatcagatcctgatcgtcatcggtgagacaggttct
ggaaaaaccacccaaataacccaatacctagcggagtgtgggcttacagcgcgcggtaag
atcgcgtgtacgcagccgcgtcgtgtcgctgccatgtcggtcgctaaacgcgtcgccgag
gagttcggctgcaggctggggcaggaggtcggatacaccatccgtttcgaggactgcacc
agcccagataccgttatcaagtacatgacagacggtatgttactcagagagtgtctcatg
gacctagaccttaacagctactccgtcataatgttggacgaggctcacgagcgtaccatc
cacactgacgtacttttcggtctactcaagcaagctgtccagaagcggccagagctcaaa
ctcatcgtcacctcagccaccctggatgccgtcaagttctcacaatacttcttcgaagca
ccaattttcacgatacctggcagaaccttccctgtagaagtcctgtatactaaggaaccg
gaaactgactatctagatgcttctttgattactgtaatgcagatacatttgagagagccc
cctggagacattctcctgttcttgactggacaggaagaaattgacactgcctgtgagatc
ctctacgagcggatgaagtccctgggccctgatgtgccagagctgatcatcctgcccgtg
tattcagcccttccatctgaaatgcagacaaggattttcgagcctgccccaccaggttcc
aggaaagtggtcatagccaccaatatagcagagacttccttaacaatagacggtatatat
tatgtagtggatccagggtttgtgaaacagaaagtttataactcgaagactggtatggac
tcgttggtcgtcacacctatttcgcaggctgcggccaagcagcgagcaggtcgggctggc
cgtacgggtcccggcaagtgctaccggttgtacacggagcgtgcctaccgtgacgagatg
ctgcccacaccagtgccggagatacaacgtaccaaccttgccaccaccgtattgcaactg
aaaacaatgggcatcaatgacctgctgcactttgacttcatggacgcgccaccggtggag
tcgctgatcatggcgctggagcagctgcactcactctccgcgctcgactccgaggggctg
ctcaccaggctcggacgaaggatggctgaattccctctagagccgaatctctcaaagatc
ctcattatgtctgtagcactacagtgctcagacgagatcttgaccatcgtgtctatgctc
agcgtccagaacgtgttttaccgacccaaagacaagcaagcactagctgaccagaagaaa
gccaagttcaaccagcccgaaggtgaccatctaacgctgctagctgtgtacaacagctgg
aagaacaataagttctcaaatgcttggtgctacgaaaactttgtgcagatcaggaccctg
aagagagctcaagatgtcaggaaacagttgctcgggattatggacagacataaattggac
gttgtatctgccggtaaaaatacagtgaggattcagaagacaatatgctcaggtttcttc
agaaatgccgcaaagaaagaccctcaagaaggctacagaacactagtagacagccaagtg
gtatacatccatccttcaagtgcattgttcaatcgacaaccggaatgggtaatctatcac
gagcttgtccaaactacaaaagagtacatgcgcgaagtgaccacaatagacccgaaatgg
ttggtagagttcgccccagccttcttcaagttctcggacccgacgaaattatctaaattc
aagaagaaccagcgcttggaaccgctgtacaataagtacgaggaacccaatgcttggaga
atatccagggtccgcaggaggaggaattaa
DBGET
integrated database retrieval system
