Manduca sexta (tobacco hornworm): 115442805
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Entry
115442805 CDS
T07401
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115442805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msex03021
]
115442805
Enzymes [BR:
msex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115442805
Transcription machinery [BR:
msex03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115442805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF6179
SURF2
Motif
Other DBs
NCBI-GeneID:
115442805
NCBI-ProteinID:
XP_030023830
LinkDB
All DBs
Position
14:2535591..2541667
Genome browser
AA seq
1654 aa
AA seq
DB search
MAFQSTFSSLSRLPTVEPDSLEFLMFSDEHIRKLSVAKITHIQSFDSIGNATKGGLYDSA
LGPLRDRNDNCETCNKPLLHCPGHFGHIELPLVVVNPLFIKNIYTLFRISCLKCFKIQLN
DRLKFILKLQLDLIDAGHVTAALDLENFVGDIMEGKKDSEKPHKIIRKYQKLLKKRDGIV
ETFHNKNVDRIRSRILNGYFRTMNVAKKCIFCNCKLIKVTTSENKIMYNLATEGNTKGIK
ILMPDEIKRHCTAIAENNDDLLQYFFPVLRHTETNPVSDMFFMELIPVLPPCVRPCNVMR
GELIEHPQTNVYKGVLLHSYSARAVLQVLAAPDQQKAVDRLEQLPRQAYEAVNGKTAAEK
LHVVWQDLQKSVNNLLSCEGTGNNSQGLKQILEKKTGLIRMHMMGKRVNFAARSVITPDP
NVDIDEIGMPDVFAKKLTYPVPVTEWNVDELRKMVINGPNVHPGAEKLEVKNGRIIRIPP
DSIVKRKSLAKRLLTPDGYKTSELKIVHRHLVNGDILILNRQPSLHKPSMMAHRARILKG
EKTLRLHYANCKSYNADFDGDEMNAHFPQNELARSEAYNIMSVRKQYLVPKDGTPLSGLI
QDHVISGVRMSLRGTFYTKSDYQQLVFQALANHRGKIKLLPPTILKPVVLWSGKQVLSTI
IINTIPKGKPLLSLTGKAKISSKAWQCEPPRTWKAGGTVFSDPNTMTEAEVVIRKGELLS
GVLDKTHYGATPYGLVHCMYELYGGDSSSALLSSFSKVFTFYLQWIGFTLGVKDILVVDE
ANKKRDEFIRSVRNAGKGAAVKSTELPEDVDDGMLKDTIAEMCAKDPKFRTSLDRQYKNM
LDTFTNNINKVCLSEGLLEKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPL
MISGRSLPSFPPYDVSPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL
QRCLIKHLESLMVAYDHTVRDADNSVIQFAYGEDGLDVLKCQYLKQGQFEFLDKNSDAVV
SKGVLKKLKEGLDAKSIAKLQKSLKKWKKRNGSPFQKTRVSGFTQFSALAKKDIELDDMP
TDKTRDPFYWELEKQWRSLDEEEKSQYVLKKCPEPIPSKMSPEYKLGVINEQLQDLIDNY
LKTRKISEYEYCTDSDKFAEVMSAKFLESMAAPGEPVGLLAAQSIGEPSTQMTLNTFHFA
GRGDMNVTLGIPRLREILMTASAKLKTPSMDIPFLDLPNLNKKAERLRQKLNRVTVADVL
EKIDVQCQIVINPERQLKTTMRFTFLPHSQYKSQYAVKPAQIINHMQKKFFDEMFAVVRK
QAKTTCGVVWATEQKKQRSRANDDDETEDTPELPEPADKGDADSSDDEAPNEDDDNTAAK
IRNKRTEEQEYEDPESEEEEKSDDEAELVDDQAKETDLDESKDVDPDSSKIMSNVVESLK
SATNYTFDTKKHQWCELTVLFPISFLRVDLSQALREAAAKSVVHEIKNIKRAITNKEKNV
LFLRTEGINILQMFKYNNLLDLNKLYSNDIHAIANTYGIEAANKVIIKEIQNVFNVYGIT
VDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLIFLRDAVMNSKKDNLRS
ASSCLMIGQPCRSGTGMFDVQLNKFACDVKSIKT
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atggcttttcaatcaacattttcgtcgctgtcgcggctaccgacggtagagccggattcc
cttgaattcctgatgttttcagatgaacacataagaaaattgagtgttgcaaaaattacc
cacatacagtcattcgattctatcggaaacgccacgaagggtgggttatatgattccgca
ctcggtccactgagagacagaaacgacaactgtgaaacatgtaacaagcctttattgcat
tgtcccggacattttggacacatagaactacctctggttgtagtaaatccattatttata
aaaaatatatacaccctattccgtataagttgcttgaaatgcttcaagatacagctaaat
gataggcttaaatttattctaaaacttcaacttgacttaattgatgctggccatgtaact
gctgcattggatttagaaaattttgtgggagacataatggagggtaaaaaagattcagaa
aaaccacacaaaataatacgaaaatatcaaaagcttctaaagaagagagatggcattgta
gaaaccttccataataagaatgtagataggataagatcgaggatactaaatgggtacttc
agaacaatgaatgtggccaaaaaatgcatattttgtaattgtaagctaatcaaagttaca
acttcagagaataaaatcatgtacaatctcgccacagaaggtaatacaaaaggaatcaaa
atcttaatgcctgacgagattaaaagacattgcacagctattgctgagaataatgatgat
ttactgcaatacttcttcccggtccttagacatactgaaactaatcctgtctctgacatg
tttttcatggaactcataccagttttaccaccttgtgttcgaccatgcaatgtaatgaga
ggggaattaattgagcatccacaaaccaatgtatacaaaggagttttacttcattcatac
tctgcaagagctgtcttgcaagttctggcagcaccagatcagcaaaaagctgttgatcgt
cttgagcaactaccaagacaggcttatgaggctgtgaatggtaaaacagcagctgaaaaa
ctgcatgttgtgtggcaagatttgcagaaaagtgtcaacaatttacttagttgtgaaggt
actggaaacaacagtcagggtttaaaacagatattggagaagaaaacaggcttaataaga
atgcatatgatgggcaaaagagttaactttgctgccagatctgtcatcacacctgatcca
aatgttgatattgatgagattggtatgcctgacgtatttgcgaaaaagcttacctaccca
gtccctgtaactgaatggaatgttgatgaattgaggaaaatggtaataaatggacctaat
gtacatccaggagctgagaaattggaagtaaaaaatgggagaataattcgcatcccacca
gattcaattgtaaagcgtaaaagtctcgccaaaaggttgttaactcctgatggatataag
acttctgaactcaaaattgtgcatcggcatctagttaatggagacatactgattctcaat
cgacagccatcacttcacaaacctagtatgatggcacacagggcgagaattctgaaaggt
gaaaaaactctaagattgcattatgctaactgcaaatcttataatgctgactttgatggt
gatgaaatgaatgcccattttccacaaaatgaattagccaggagtgaagcatacaacatt
atgtccgtcaggaaacaataccttgtcccaaaggatggtacaccgctaagtgggctcatt
caagatcatgttatttctggagtgaggatgtccttaagaggaacattttatacaaaatct
gattaccaacaacttgtattccaggctttagcaaaccatagaggaaaaatcaagttatta
ccaccaacaattcttaaaccagttgtgctttggtctggaaagcaagttctgtcaactatt
ataataaacaccattcccaaaggaaaacctctcctttcattgactggcaaagctaagatt
agctcaaaagcgtggcaatgtgagccgccacgcacatggaaggccgggggaacggtattc
tctgatccaaatactatgacagaagcagaagttgttattagaaaaggagaacttctgagt
ggtgtactggataaaacacattatggtgcgacaccttacggtttggtacattgcatgtac
gaattgtatggtggtgacagttccagtgcattgctcagttcattttcaaaagtctttaca
ttttaccttcagtggattggattcactctcggggtcaaagacattcttgttgtagacgag
gcgaacaagaaaagagatgaattcatacgttcggttcgaaatgcggggaagggtgccgcc
gtcaaaagcactgaacttccagaagatgttgatgatggaatgttaaaggacacaatcgcg
gaaatgtgtgctaaagatccaaagtttcggacgagtttggatagacaatacaaaaacatg
cttgacactttcacaaataacataaacaaggtctgtttatcagaaggtttattggaaaaa
tttccagataacaatcttcagttgatggtccagtctggtgctaaaggatctactgtaaac
actatgcagatctcctgtttgcttgggcaaattgaattagaaggtaaaaggcccccactt
atgatatcaggtagatctttgcccagtttccctccttacgacgtctcgccacgagccgga
gggtttatcgatggacgttttatgacaggaattcagccgcaagagtttttcttccactgc
atggctggacgtgaaggtcttattgataccgccgttaaaaccagtcgttcaggttactta
cagaggtgcttgatcaaacatttggaaagtctgatggttgcgtatgaccatacagtaaga
gatgcggataatagcgtcattcaatttgcttatggtgaagatgggttagacgtattaaag
tgccaatatctcaaacagggccagtttgaattcttagataaaaattcagatgctgtcgta
agcaagggagtacttaagaaacttaaagaaggcctggacgctaaatctattgctaaatta
caaaaatctctaaagaaatggaagaagagaaatggcagcccattccaaaaaacaagggtt
agtggatttacccagttttctgctttagccaagaaagatatagagctagacgatatgcca
acagataaaacaagagatccattttattgggaactagaaaagcaatggagatctttggat
gaagaagagaaatctcaatacgtattaaaaaaatgtcccgaaccaatacccagcaaaatg
tctcctgaatacaaactgggtgtaataaacgaacaattacaggatcttattgataactac
ttgaaaactagaaaaataagtgaatatgaatactgtaccgatagtgataaattcgccgaa
gtgatgagcgcaaaattcttagaatcgatggcagccccaggagagcccgtgggattgtta
gcggctcagtcgatcggagagccctccactcagatgacactgaacaccttccacttcgcc
ggtcgtggtgacatgaacgtcacccttggtatccctcgtctgcgagaaatcctcatgact
gcgtcggcgaaattaaagacacccagtatggacataccgttcctagacctgccaaactta
aataagaaggccgaacgtcttcggcagaagctaaatagagttacggtagctgatgttctg
gaaaagatcgatgtgcagtgccagatagtaatcaatccagagaggcagttaaagacgacg
atgcgtttcacgttcttaccacactctcaatacaagtcgcagtatgcggtaaagccggcc
cagatcataaatcacatgcagaagaagttctttgatgagatgtttgcggtagtgaggaag
caggctaagaccacctgcggtgtggtatgggcgacggagcagaagaagcaacggtcccgc
gcaaatgatgacgatgagaccgaggacacgcctgagctgcccgaaccggctgataagggg
gacgcagatagttctgatgacgaagcacctaacgaagatgatgacaataccgcggcgaaa
atccgcaacaagaggaccgaagaacaagagtacgaagatccagaatccgaagaagaggag
aaatcagatgacgaagcggaactcgtcgacgaccaagcgaaagagacggacttagacgag
tcgaaggacgtagacccagactccagcaaaatcatgtccaacgtcgtggaaagtcttaaa
agcgccaccaattacaccttcgataccaaaaaacaccagtggtgcgaactcactgtgctg
ttcccaatatcattcctcagagtcgatctatcacaagctttgcgggaagcagctgccaaa
tcagtcgtacacgaaataaagaacatcaaacgagccataaccaacaaggagaagaatgtc
ctattcctcagaactgaaggaataaatatattgcaaatgttcaagtataataatctgttg
gatctaaataaactttacagtaacgatatacacgccatagccaacacttacggcatagaa
gcggccaataaagtgataataaaggaaattcagaacgtgttcaacgtctatggtattacc
gtagacccgagacacttaacccttatagctgactacatgacctataatgggatatttgag
cccatgagccgtaaaggaatggaggcgtcgtcttcgccgcttcagcagatgtccttcgaa
tcgtcgcttatattcctaagggatgcggtaatgaattccaagaaggataatctgcggtcg
gcctccagttgtcttatgatagggcagccttgccgcagcggcactggcatgttcgacgtg
caactcaacaaatttgcgtgtgatgttaaatctatcaaaacttag
DBGET
integrated database retrieval system
