Manduca sexta (tobacco hornworm): 115443687
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Entry
115443687 CDS
T07401
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03013
Nucleocytoplasmic transport
msex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115443687
03015 mRNA surveillance pathway
115443687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115443687
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115443687
mRNA cycle factors
P-body specific factors
115443687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
HA
DUF7792
RhoGAP
Motif
Other DBs
NCBI-GeneID:
115443687
NCBI-ProteinID:
XP_030025053
LinkDB
All DBs
Position
23:4700507..4705992
Genome browser
AA seq
1109 aa
AA seq
DB search
MTSTDNEPEKSEAPVQDEPENTEESEKSTLSEYVANLEARLKQKAEVRNQNLNCVRPPEN
YFSKLDSGLKKNTTFVKKLKSFSATQIDVLLKDFSALNLTKYISEVAAAIAEAKLKMSDI
PAALQLCSLLHRTYAEFSSNFFENWQKILTFKATDKIVNSSKLRVDIRFYAELVAAGIFM
NKTGLPLLGNVLTVLISMDKEEHNNIPILLSFCKHCGEDYAGLMPKKIRDSAEKYNVTIP
RNTFLPAEKQTVVRSLLKDYFVSLTKHLLAERAQLQALHAANQRTLHTRGELSQERKDQL
EQHQATYDKLLVGAQNFAEVLGEELGEAGEPPTLTMTVIETQGSVTIGGNEEFNMQAGTD
PWQDEDTRTFYTILPDLKDFMPNYQLKETVKNKTETVTEEMLDEDIKEDDLSDTEEPPTV
PDVEQEEAQPTYVSNKYALDAFLSDLPNCINRELIDNAAVDFVLNLNTKNNRKKLTRELF
SVARTRLDLLPFYSRFAAILYPVLSDVCVDLCQMLKQDFKYHVRKKDQINIESKIKVVRF
IGELVKFGLYSKMEALFCLKVLLHDFKHHHIEMACNLLETCGRYLYCNSDTHQRTVIYLQ
QMMRKKTVSALDSRYVTQIENAFYYVCPPETPAQPKEEEPPMHQFIRKILHEDLQKSNEE
KILRLMRKLNWDDPDISAIAIQHLAGGWRVRASARRALARLTAELAAWQEVVAPAVVDTI
LEEIRLTMEDPHPRYNQRRIATVKYLGELYNYKLLDSRDVFTVLYSFITFGVTNDHNTVS
PLDPPENVFRIRLVCALLEICGAYFNSGSSKKKLDYFLIFFQHYFWFKYSDPIWTDENKF
PIYVYNIYQECLTNLRPKLNMFTSWQQCKDAIEELRQTLYPELGEEEIDNEDHGDDSVNE
GLDTIIETDDETDNPHLPEESSDEEPLPENMNNDEGLLQDDMNMEPRRPAPKPVEDVEFE
SAFEKMVTENIAERQRENRPQQRDIAVPMTCRQTTKKTYEQLLQGKEGVEFVLMVRKGTK
PQYKSFSAPPELASNLQQQALADKQEMERVKRLTLNISERQEEEEYSAESGGGSGGSGNP
NRGQHVRQKYQHPKGAPDADLIFGPKKFK
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaactgacaacgagccggagaaaagtgaagcacctgtacaagatgagcctgaa
aatacagaggaaagtgaaaagtccacacttagtgaatatgtggcaaacctggaagctaga
ctcaaacaaaaagctgaagtacgtaaccaaaacttgaattgcgttcgccctccagagaat
tatttctcaaaattggattccggtctgaagaaaaatacgacctttgtaaaaaaattaaag
tcgttcagtgctacacaaatcgacgtacttttaaaggattttagtgctttgaacctaaca
aaatatatatcggaggttgcagccgctattgcagaagcgaaactaaagatgtcagacatc
cctgctgcacttcaactgtgttcattgctccatcgaacttatgctgagttttcatcaaac
tttttcgaaaactggcaaaagattttgacatttaaagctacagataagatagtgaattcg
tcgaaattacgggtggatatcagattttatgcagagctggttgctgcgggaatatttatg
aataaaactggattgccgttgttgggaaatgtacttactgtgctcatatctatggacaaa
gaggaacataacaacataccaatactgttgtcattctgtaaacactgtggtgaagattat
gctggactaatgcctaaaaaaataagggattctgctgagaaatataatgttacaataccg
cggaacacttttctaccagctgagaagcaaacagtagtgcggtcactgttgaaggattat
tttgtgtcattgactaagcacttgttggctgaaagagctcaattgcaagcgttgcatgct
gccaatcaaagaacactgcataccagaggtgaactgtcacaggaaagaaaagatcagttg
gagcaacatcaggctacctatgataaactgttggttggtgctcaaaactttgctgaagtt
ttgggtgaagagttaggagaggctggtgagcctccaaccttgactatgaccgtgatagag
actcagggatccgtcaccataggtggcaatgaggagttcaatatgcaggctggcacagac
ccatggcaggatgaagatacaaggactttctacactatactaccagacctcaaagatttc
atgcctaattatcaactaaaagagactgtgaaaaataaaacagagactgtgacagaagag
atgctggatgaagatataaaagaagacgatttgagtgacactgaggagccacctacagta
cccgatgttgagcaggaagaggcacagccaacttatgtctctaataagtacgcacttgat
gcatttttaagtgatttaccaaattgcatcaatcgcgaactaatagataatgccgccgtg
gattttgttttgaatctcaatacgaaaaataatagaaagaaactaacaagagaattgttc
agtgttgccagaactcggcttgacttactcccattctattcaagatttgcagctattctg
tatcctgtgttgtctgatgtatgtgttgatctgtgtcaaatgttgaagcaggattttaaa
tatcatgttagaaagaaggatcaaatcaatatagagtcaaagataaaagtagtgagattc
ataggagagttggttaaatttggtttgtattctaaaatggaagctctgttctgcctcaaa
gtacttctgcatgactttaaacatcaccacattgaaatggcatgcaatctgctggagact
tgtggaagatatttatattgtaattcagacacacaccaacggacagtgatatatttgcag
caaatgatgaggaaaaagactgtgtcagccctagattcgagatatgtcacacaaatcgaa
aatgcattttattatgtttgtccacccgaaacaccggcgcaacctaaggaagaagaaccg
ccaatgcatcagttcatcaggaaaatactacacgaagatttacagaaaagcaatgaagag
aaaatacttagactgatgcgtaagttaaattgggacgaccctgacatttcggcaatcgca
attcaacatttagcaggtgggtggagggtgcgagctagtgccagaagagctttggcgcgc
ctcacagctgaactggcggcatggcaagaagtagtagcgccagcagttgtggacacaata
ttagaagagataagacttactatggaagatccgcacccaaggtacaatcagagaagaata
gccacagtcaaatatctcggcgaattatacaactacaagctattggattcccgcgacgtt
tttacagttctgtattcgtttataacttttggggtgacaaacgatcacaacactgtctcg
cctttagatcctcccgaaaacgttttcagaataagactggtttgcgctctcctcgagatc
tgcggcgcttatttcaacagcgggtctagtaagaagaaactcgattacttcctaatattt
ttccaacattacttttggttcaaatactccgatccgatatggactgatgaaaacaaattt
cccatttacgtatacaatatatatcaagaatgcctgaccaatttgaggcctaagttaaat
atgttcacaagttggcaacaatgtaaagatgctatagaggaattgcgacagactttgtat
cctgaattgggtgaagaagagatcgataatgaagaccacggtgacgatagtgtgaatgaa
gggttagacacgattatagagacagatgatgaaacagacaatccacatttgccagaggaa
agttctgatgaagaaccactgccagaaaatatgaataatgatgagggtttacttcaagat
gacatgaatatggaaccacgaagaccagctccaaagccagtggaagatgtagagttcgaa
tccgcgtttgaaaaaatggttacggaaaatatagcagagagacaacgggagaatagaccg
caacagagagatattgcagtccctatgacatgtcggcagaccactaagaaaacatacgaa
cagctattgcaaggtaaagaaggcgtcgaatttgttttgatggtgcgcaaaggaacaaag
ccgcaatacaaatcgttcagcgcaccgccagaacttgcaagcaatttgcaacaacaggcg
ctggctgataaacaagaaatggagagagtgaaacgtctgactctgaatatttccgagagg
caagaagaagaagagtacagcgctgaaagtggaggaggatccggaggtagtggcaatccc
aacagaggacaacatgtccgccagaaatatcagcatcccaaaggagcacctgacgcggat
ttgatatttggaccaaaaaaatttaaatag
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