Manduca sexta (tobacco hornworm): 115443736
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Entry
115443736 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115443736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115443736
03041 Spliceosome [BR:
msex03041
]
115443736
03009 Ribosome biogenesis [BR:
msex03009
]
115443736
03016 Transfer RNA biogenesis [BR:
msex03016
]
115443736
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115443736
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115443736
Spliceosome [BR:
msex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115443736
Complex C
U4/U6.U5 tri-SnRNP related factors
115443736
Ribosome biogenesis [BR:
msex03009
]
Eukaryotic type
Pre-60S particles
Helicases
115443736
Transfer RNA biogenesis [BR:
msex03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115443736
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
115443736
NCBI-ProteinID:
XP_037301563
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MADINNLFDCFEAEGNEAAIQLPNINSADESQPKEQLTPASNKRHHEEVEYADTTVTKTK
EKDEEEDILGDINLDLLHSRIVIHTLEAHEGCTHEVAIPPKHDYAPLAPLTSEPAKQYSF
ILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQK
YREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEVMREVGWVVFDEIHYMR
DKERGSFWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHAQPCHVVYTEYRPTPLQH
YIFPAGGDGIHLVVDEQGTFKEDNFNTAMAVLSNAGDAAKGDQRGRRGGPRDKNQTNIFN
IVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEEDR
KLPQVENVVPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPARTV
VFTSCQKFDGKEFRFISSGEYIQMSGRAGRRGLDDKGIVILMIDEKVTPTVVKGMVQGKA
DPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKLKAKQKEYDALT
VEHEDSIATYCSIRSQLDLLGNQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYDWGIIVN
FRQKTKAGKGKKEENPLTSDPVIVVDILLHVKKATDKDTEVNVPCPPGEAGDVEVVPVIH
TLIYQISSLRVYYPKDLRPSDSRKSVLKTIGEVKKRFPDGPPQLNPIKDMKIGDPVFKEC
VDRIQILEERLYAHPLHKDKNRSALTAAYERKQELHEDLVNATAELKKAKSVLQMDELKK
RKRVLRRLGYCTASDVIEIKGRIACELSSADELLLTELIFNGVFKSLSSEQSAALVSCFV
CDENSTQASASGDELRGVLRQLQEYARRIAKVSIDAKMDLDEDEYVNKFGRTLMDVVLAW
AKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKLLKRD
IVFAASLYM
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcagatataaataatttattcgattgctttgaggcagaaggaaatgaggctgctata
cagctccctaatattaacagcgcagacgagtcgcaaccgaaggaacagctaacgccagct
tctaataaacgtcaccacgaggaggtcgaatatgcggatacgactgtaacaaaaactaaa
gaaaaagacgaagaggaggatatattaggagatataaatctagatctcctacactcccgt
attgtaattcacacattagaagcacacgaggggtgcacgcacgaggttgcgatacctccc
aaacatgactatgctcctcttgctcctctcacatctgagccagctaaacagtacagtttc
atattagatccatttcagaaagaagccatattatgtatagacaacttgcaatcagtcttg
gtgtctgctcatacttcagcgggaaaaactgtcgtagcagaatatgcaatagcactctca
ctgaagaacaaacaaagagttatatacacaacacctataaaagccttgtcaaatcaaaaa
tacagagagttctctgaggaatttcatgatgttggtcttatcactggagatgtaaccata
aatccttcagcgtcatgtcttatcatgaccacagagattttacgaaacatgttgtacaga
ggttcagaagttatgcgagaagtggggtgggtggtatttgacgaaattcactacatgagg
gacaaagagagaggctcgttttgggaagaaacattaattctcctaccagacaatgtccac
tatgtgttcttgtcagctacaataccgaatgcgcgtcaatttgctgagtgggtgtgtcgc
ctgcacgcacagccatgtcacgttgtgtacacagagtacagacctactccattacagcac
tatatattcccggctggaggagatggcatacatttagttgttgatgagcagggtacgttc
aaagaagacaactttaacacagcaatggcggtgttaagtaatgctggagacgcggctaaa
ggcgaccagcgtggtcgtcgcggtggcccgcgcgataagaaccagactaacatattcaac
atagtcaaaatgatcatggagaggaatttcgcgcccgtcataatattcagtttcagcaaa
aaggactgcgagttgtacgcaatgcaaatggcgaagcttgactttaatacaattgaggag
aagaaattggtagatgaagtgtttaataacgcaatggatgttctctctgaggaggaccgc
aagcttcctcaagtagagaatgtggtaccactgctgcgccgcggtatcggcatacatcat
ggcggactgctgcccatattgaaggaaactattgaaatattgtttggcttgggacttatc
aaggccctattcgcgacggagacattcgctatgggtttgaacatgccggcccgtactgta
gtgttcacaagttgtcagaagtttgatggaaaagaatttagatttatatcatcaggggag
tacatccagatgtcaggtcgagccgggcggcgtggtctcgatgacaagggcatcgtgata
ctgatgatagacgagaaggtcacgcccaccgtggtcaagggcatggtgcagggcaaagca
gaccctatcaactccgcctttcatctaacttataacatggtactgaatttgttacgagtt
gaagagattaatccagaatacatgttggagaggagtttcttccagttccagaatcaagct
gcgattccagatctcattgacaagttaaaagcaaagcagaaagaatacgacgcactgaca
gtggagcatgaggactcgatagccacatactgcagcatccgatcgcagctggacctgctc
ggcaatcagttcaggtcgttcatcaccaagccggaatacttgaaaccttttctgcaacct
ggacgacttgttaaagtgaaaacagagaaatacgaatacgactggggtataatagtgaac
ttcagacagaaaaccaaagcgggcaaaggtaaaaaggaggagaacccattgacatctgac
ccggtgattgtggtagacattctgttgcacgtcaagaaagcgacggacaaagacactgag
gtcaatgtgccgtgtccgcctggcgaggcgggcgacgtggaagtagtgccagtgattcac
acgctcatctatcaaataagttctctacgcgtgtactatcctaaggacttgcggccctcg
gacagtcgcaagtcagtactgaagaccattggcgaagtgaagaaacgattccccgacgga
ccaccgcagttgaacccgataaaagatatgaaaatcggcgacccagtgttcaaagaatgt
gttgatagaatacagatattggaggagagattatacgcacatccgttacacaaagacaaa
aaccgaagcgcactcacagccgcgtacgagaggaaacaagagctccacgaggatctcgtc
aatgccacagctgaactgaagaaggcaaagagcgtgctgcagatggacgagttgaagaag
aggaaacgagtgttgcggcggctcggatactgcaccgccagtgatgttatcgagattaag
ggacggatagcctgcgagttaagcagcgccgacgagctgctgctgacggagctgatcttc
aacggcgtgttcaagtcgctgagctcggagcagagcgcggcgctggtgagctgcttcgtg
tgcgacgagaactccacgcaggcgagcgcctcgggcgacgagctgcgcggcgtgctgcgc
cagctgcaggaatacgctcgtcgaatagccaaagtttctattgacgcgaaaatggatcta
gacgaggacgagtacgtgaacaagttcgggcgcacgctgatggacgtggtgctggcgtgg
gccaagggcgcgtccttcctgcagatctgcaagatgaccgatgtgtttgaaggctcaata
atcagatgcatgcgacgacttgaggaggttctacgacaactttgccaagcggcgaagaat
attggaaacacggacttggagaacaaattcagtgacgccatcaaactgttgaagagagac
atcgtgttcgccgccagtctttacatgtga
DBGET
integrated database retrieval system
