Manduca sexta (tobacco hornworm): 115443814
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Entry
115443814 CDS
T07401
Name
(RefSeq) putative uncharacterized protein DDB_G0293878 isoform X2
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115443814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msex03000
]
115443814
03019 Messenger RNA biogenesis [BR:
msex03019
]
115443814
04121 Ubiquitin system [BR:
msex04121
]
115443814
Enzymes [BR:
msex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115443814
Transcription factors [BR:
msex03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
115443814
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115443814
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115443814
Ubiquitin system [BR:
msex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115443814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-RING_2
zf-C3HC4
Nup35_RRM_2
zf-C3HC4_2
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
115443814
NCBI-ProteinID:
XP_030025237
LinkDB
All DBs
Position
3:complement(5280291..5299725)
Genome browser
AA seq
904 aa
AA seq
DB search
MSVLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIREGENGLCPACRKAY
PENPADFIPLSQEQVAAIKTEKKAREQKRRNKTLESRRALANVRVVQNNLVFVVGLPVRL
ADPEILKRQEYFGKYGKIHKVVINQSTAYAGSQGPSASAYVTYVSPADALRAIQGVNNVT
LDGRVLKGSLGTTKYCANFMKNQPCPKPDCMYLHELGDPKASFTKEEMHAGLHQVYERKL
HNQLLAAQRDKPDDKHSNSSGNSSTNAEKSSSKDGNQTNFIPTTVVTSSHINIVNSKSKK
ECVNGSSGSGNSNGVGSGSSSSGSSSGKEAWPSLGSSPPSDSPARKQSSPKPHNSTVKSQ
ENGTSESSSPTQLQTNTQQAQTKNSKDTHTESNKTKSNRDTNSTNGQTKKNKSDKSKQKS
SNSISNDNNCEEIVDTYSGQTQSSSVFENDTQQNYLSNELDELESDRHSLLENHDLLDNS
DHSLLDDDNTHNLLNDANNEVMMMQRHREMLAGLVDNNHLMPQMKSPILNGYGLLDRDMS
YLANDRQISQINQGMMDQKELLLRERSQSEMLMRQNELLARQINVMVEPKHYMPSSSIGL
ESASELLGANFHPNPSMLPPFGMRVEGSLGLNMGGFVLHNQHNQHNQHSQHNQHVSQPQQ
QLVNGFDAPQSNSEGRYLAESMDKFFMDFHKAQQMRLQSRTGAGASAGAGAGADERRYLD
HQPLPHNVLSAERLEMEHKQRMNNFRGAESGGRAAGDGDDDLDFDPFKETQKAFAELMET
EMMQNAVSSGDNMDRVRRSRLAPPGFSHMNSFGLGVPRQQTHHQGYNSNNAMFSDWTQMD
PAIMSTSVNFGKSVQSQLLLLQRRAHAAAAGTVRALQPAGRRRRQAAGAAVGRASAGAGA
AAAG
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgttgaatcagagcggagaagagcaggtggaatgtcccctgtgtatggaaccc
ctcgaagtggacgatctccacttctacccgtgcacatgtggatatcaaatatgccggttt
tgctggaaccgaatccgggaaggcgagaacgggctgtgtccagcgtgtcggaaagcctac
ccggagaacccggcagacttcattccgctcagtcaagagcaggtggcggccataaagacg
gagaagaaggctcgcgagcagaagcggcgcaacaagacgctggagtcgcggcgcgcgctg
gccaacgtgcgcgtggtgcagaacaacctcgtgttcgtcgtcggcctgcccgtgcggctc
gccgacccggagatcttaaaacggcaggagtactttggcaaatatggcaaaattcacaaa
gtagttataaaccaaagtacagcatatgcagggtcacagggtccgtccgcgtcggcgtac
gtgacgtacgtgtcgccggcggacgcgttgcgcgccatccagggcgtcaacaacgtgacg
ctcgacgggcgcgtgctcaagggctcgctcggcaccaccaagtactgcgccaacttcatg
aagaaccagccctgtccgaagccggactgcatgtatctgcacgaattaggtgatccaaaa
gcgtcgtttacgaaggaggagatgcacgcgggtctacaccaggtgtacgagcggaagctc
cacaaccagctgttggccgcgcagagggacaagccagacgacaaacacagcaacagttca
ggtaattctagtacgaatgcagaaaagagcagttctaaagatggtaatcaaacgaacttt
ataccgacaacagtggtcacatcttcacatataaacatagtcaattctaaatctaaaaag
gagtgtgttaacggcagctcgggcagcggcaatagcaacggggtcggcagcggcagttct
agcagcgggagcagcagcggcaaggaggcgtggcccagtctcggctcctcgccgcccagc
gacagtcccgccagaaaacagtccagtccaaaacctcacaattctacggttaagtcacaa
gaaaacggcacatcagaatcttccagtcccacacaattacaaacgaacacacaacaggct
caaacgaaaaatagtaaagacacacacacggaaagcaataaaacgaaatcaaacagggat
acaaatagcacaaatggccagacaaagaagaacaaaagtgataaatccaaacagaagtct
agcaatagtattagtaatgataataattgtgaagaaatagttgatacgtacagtggacag
acgcagagctcatcggtgttcgagaacgacacgcaacagaattacttatcaaacgaattg
gacgaactggagtctgatagacatagtttgttggagaaccacgacctgttagacaatagc
gatcacagcctgttggacgacgacaacacgcataacctgttaaacgacgcgaacaatgag
gtcatgatgatgcagaggcatagagaaatgttggccggcctagtggacaacaatcatttg
atgccgcaaatgaaaagccctatattaaacgggtacggactgttagacagagatatgagt
tatttagcaaatgatagacagattagtcaaattaaccaaggtatgatggaccagaaggaa
ttgctcctgagggaacgcagtcagagtgaaatgttgatgagacaaaacgagttgttggcg
agacagataaatgttatggtcgaacctaaacattatatgccctcgtctagtataggactc
gagtctgctagtgaattattaggtgctaatttccatccgaacccttcaatgctgccaccg
ttcggcatgcgcgtggagggttcgctgggtctgaacatgggcggtttcgtgctgcacaat
cagcacaaccagcacaaccagcacagccaacacaaccagcacgtgtcacagccgcagcaa
cagctcgttaatggtttcgacgcgccacagtctaatagcgaaggtcggtacctagcggag
agtatggacaagttcttcatggacttccacaaggcgcagcagatgcggctgcagtcacgg
acgggcgcgggggcgagtgcaggcgcgggcgcgggcgcggacgagcgccgctacctcgac
caccagccgctgccgcacaacgtgctcagcgccgagcgactcgagatggaacacaagcag
agaatgaacaacttccgtggcgcggagtcaggcgggcgggcggcgggcgacggcgacgac
gacctcgacttcgaccccttcaaggagacgcagaaggccttcgcagaactcatggaaacg
gaaatgatgcagaatgcagtttctagcggtgataacatggatcgcgtgcgtcgctcccgc
ctggcaccccccgggttcagtcacatgaactcattcgggctcggcgtgccgcgtcaacag
acacaccaccaaggttacaactcgaacaacgccatgttctcagactggacgcagatggac
ccggcgatcatgtcgacgtcggtgaacttcggcaagtcggtgcagagccagctgctgctc
ctccaacgccgcgctcacgccgcagcagcaggaactgttcgcgcgcttcaaccagctggg
cgtcggcgtcggcaagctgccggcgctgcagtggggcgcgcgagcgcgggcgccggcgcg
gccgccgcggggtag
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