Manduca sexta (tobacco hornworm): 115444777
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Entry
115444777 CDS
T07401
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
msex
Manduca sexta (tobacco hornworm)
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msex03041
]
115444777
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115444777
Spliceosome [BR:
msex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115444777
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
YTH
R3H
Helicase_C
Ank_2
DEAD
Ank_5
RNA_hel_CTD
Ank
AAA_19
nSTAND3
AAA_25
Ank_4
AAA_22
WHD_HA2
AAA_14
T2SSE
Ank_3
UvrD-helicase
nSTAND_NTPase5
SRP54
ATPase_2
Cas3-like_C_2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
115444777
NCBI-ProteinID:
XP_030026544
LinkDB
All DBs
Position
8:complement(12085717..12116414)
Genome browser
AA seq
1343 aa
AA seq
DB search
MSSKKGKRNNGNKHFPIAESVSIALKIQLDKFISDENETELKFPTFLSAQERGFIHETVA
KLGLKSKSRGKGVNRYLTIYKRIGSTIIQNDAKLILDSNMRCSITELFNAFPITSKEKDD
LSSCPEKERSPQLAHKTLGQLNNGVAQIPTTTYNPELIKFRDKLPVYEQRQDLLNAILHN
QVIIVAGATGCGKTTQLPQLILDYCQEHKQPARIYCTQPRRISAVSVAERVAHERMEKIG
QSIGYQIRLESRVSPRTVLTYCTNGVLLRTLMAGDTSLTGVTHVFVDEVHERDKFSDFLL
IALRDALPRFKDLKLILMSATMDTQIFSRYFNNCPVVTIPGRLHEVQLYYLEDVLKITQY
KTKKMQIVEKDLKARLKSGRSYWSQLETQKQAVEESTSKEDKESVMDPALQADMDEFLEE
CFKEGSLDSFCQLLYMYVSEGVPLGAAQSQSRRTGLMAAAARGLSDMLQHLLQLGADPSA
KDKDGKTAYDYAVEKQHTDCAKLLSTFNYTEDLKENSEGDDADNFLLDVYHHTFSEELID
HDLILALIKFIHVTLPKGSILIFLPGYDDIVTLRDMIQSCAEMNVIKYQIFTLHSNMQTL
DQKKVFNPLPNGRKIIISTNIAETSITIDDVVYVIDSCKVKEKYYESNGGVCSLQCVWTS
RACCQQRAGRAGRTKPGHCFHMCSNRRFKALPLNSVPEILRVPLQELCLHTKLLAPGNTP
IADFLSKALEPPSFLAVRNAVTLLKTIGALTPMEDLTEIGQHLLDLTVEPKLGKMLLYAC
VMKCLDPILTIVCCLANKEPFQISMNPENRKKGSLARKEFAADSYSDHMALLRAFQAWQT
ARANGTEKAFCAKNLICGATMEMIVGYRSQLLAQLRALCLVKARGSGDIKDVNLNSEKWH
VVKAVLVSGLYPSIARVDRDSSTLRTSKEVKVAFHPSSTLHRGGGVTGSQKSVKNLPTDW
VVFEEISRAGRFCFIRCNTLVTPLTVALFGGPLRLVPGALTQRANPPGLSSDSDSEADEN
NSSPDTAVLTLDDWMAFTADASDAISVYYLRQKLCALVIRRMSNPGKPMTPLDEQILNTV
VHILGAEEKNVGLSQPSGIGQRPKPLTLDSPNWRMRVENDEQYRHDKYYPQYNQNDFQNN
FYHNYYRANGQGRPGWRADGMPQGFSPQSFSGPKSPMSPNGKTLLANIEKYADNGEGNVR
YVVVKVDDPHSVELAQTTNTFPFAQNTAKKLQKMKQECPRVVVFFSLASASKFVGCANLV
DGNGTLEWLSTQHVPYHMVRHVCNSLAGGARVSVSREGAELCAAAARALLHAHQRRRPAH
PPHHPHHPHHHHPRAIQKHAADH
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgaaaaagggcaagcggaataacggcaacaagcatttccctatagctgagtct
gtgagcatagcgctgaagattcagctggataagtttataagtgatgagaacgagacggaa
ttgaaattccctacattcctgtctgcgcaggaacgaggcttcatccatgagactgtcgct
aaattaggtttgaagtcgaaatcgcgcgggaaaggagtgaatagatatctaacaatatat
aagaggattgggtcgacaataatccagaatgatgccaagctcatcctggactcgaacatg
cggtgcagcatcacggagttgttcaatgcttttccaatcaccagcaaggaaaaggacgac
ctcagcagctgcccagagaaggaacggagtccacagctggctcataagaccttggggcag
ctgaacaatggagtagcacagatcccgactacaacctataatccggaactgataaagttc
agagacaagttgcccgtgtatgagcagcgacaggatctcctaaatgctatcttacacaat
caggtgataatagtagccggcgcgacaggatgcggcaagaccacccagctcccgcagctg
atactggactactgccaggagcacaagcagcctgccaggatatactgcacacagcccagg
aggatatccgccgtctctgtcgctgagagggtggcgcacgagcgcatggagaagatcggc
cagtcgatcggctatcagatccggctcgagtcccgcgtcagtccccgcaccgtgctcacc
tactgcaccaatggagtgctactgcgaacccttatggcgggggacacttcccttactggc
gtgacgcacgtgttcgtggacgaggtgcacgagcgcgacaagttcagcgacttcctgctg
atcgcgctgcgggacgcgctgccgcggttcaaggacctcaagctcatcctcatgtccgcc
accatggacacgcagatattctccaggtattttaacaactgtcctgtggtgacgatccca
gggagactgcacgaggtgcaactgtattacctggaggacgtgctcaaaatcacccagtac
aagaccaagaaaatgcagatagtggagaaggacctgaaagccagactcaagtcgggcagg
agctactggtcgcaactggagactcagaagcaggccgtggaagagagtacgagtaaagaa
gacaaagagagtgtgatggatccagcattgcaggctgatatggacgagttcctcgaggag
tgcttcaaggagggcagtctggactcgttctgccagctgctgtacatgtacgtgtcggag
ggcgtgccgctgggcgccgcgcagtcgcagtcgcgccgcaccgggctcatggccgccgcc
gcgcgcggcctctccgacatgctgcaacacctgctgcagctcggtgcagacccctcagcg
aaagacaaagatggtaaaacggcttacgattacgcagtcgagaagcagcacacagactgc
gcgaaactgttatctaccttcaactacacggaggatttgaaggagaattcagaaggagat
gacgcagacaacttcctgcttgacgtgtaccaccacaccttctccgaggagttgatagat
catgacttgatactcgcgttaataaaattcatccatgtcaccctacccaagggaagcatt
ctgatcttcctgccagggtatgacgatatagtcacgctgcgagacatgatccaatcatgt
gctgagatgaacgtcattaaataccagatatttactctacatagtaacatgcaaaccctg
gaccagaagaaagtgttcaatccactgccgaacggtagaaagattattatatctactaac
atagcggaaacttccataaccatagacgatgtggtctacgtaatagattcgtgtaaggtt
aaggagaagtattatgaatcgaatggtggagtgtgttcgttgcaatgcgtgtggacatcg
cgagcgtgctgccaacagagggcaggtcgggctgggaggaccaaaccggggcactgcttc
cacatgtgctctaacagacggttcaaagcattgcccttgaactctgttcctgagatactt
agagttcccctgcaagagttgtgcctgcatacgaagttattggcacctggtaacactccc
atagcggatttcctgtcaaaagccctggagccgccatcgttcctagcggttagaaacgcc
gtgacgctactaaagactataggtgctttgacgccaatggaagatttgaccgagattggt
caacatcttttagatttgaccgttgagccgaaattaggaaaaatgttattgtacgcgtgt
gttatgaagtgcctcgacccaattttgactatcgtgtgctgcttagcgaataaggaaccc
ttccaaatatcgatgaaccctgagaataggaaaaaaggaagcttggctcggaaggagttt
gctgcggacagttactcggaccatatggcgctcctgcgcgcgttccaggcgtggcagacg
gcgcgggccaacgggactgaaaaagctttttgtgccaaaaatctgatatgcggcgccacc
atggagatgatcgtcggatatcgatcacagctgctggcgcagttacgtgccttatgcctg
gtcaaagctagaggatcgggagacataaaagacgttaatctaaactcggagaagtggcac
gtggtcaaagcagtgttagtgagtggattgtatccatccatagctagagtagatcgcgac
tcttcgacgctccgaacttccaaagaggtgaaagtcgccttccaccccagctccaccctt
cacagaggtgggggagtgactggttcacaaaagtccgtcaagaatctcccaacagattgg
gttgtgttcgaggagatctcaagagcgggaagattctgcttcatacgctgcaatacttta
gtaacgccattaacggtagcactgtttggaggaccactgaggttggtaccaggagcgttg
acacagcgtgcgaaccctccaggattgtcgagtgattctgatagtgaggctgacgagaac
aactcctcccctgacactgccgtgctcaccttggacgactggatggcgttcacagcagac
gcttcagacgccatcagtgtgtactatctcaggcagaagttgtgcgcgttagtcatcaga
cggatgtcgaacccgggcaaacccatgacgccattagacgagcaaattcttaacacggta
gttcatatccttggagcggaggagaagaacgtggggctcagtcaaccgagcgggattgga
cagagacccaaacctctgaccctggactcgcctaactggcggatgagggtggaaaacgac
gagcaataccggcacgataaatactacccgcaatacaaccagaatgacttccagaacaat
ttttatcataattactacagagctaacgggcaaggcaggccagggtggagggctgatgga
atgcctcaggggttttcaccgcaatcctttagtgggccgaagagtcccatgtcccctaac
gggaagactttgctggctaacatagagaagtacgcggacaacggggaggggaacgtgcgg
tacgtagtggtgaaggtggacgatcctcatagcgtggagttggcgcagaccacgaacacg
ttccctttcgcgcagaataccgccaagaagttgcagaagatgaaacaggaatgtcctagg
gtagtggtgttcttctccctggccagcgcttccaagtttgtggggtgtgccaacttggtg
gacggtaacgggaccttggagtggctctccactcaacatgtgccttatcacatggtcaga
cacgtgtgcaactcgctggcgggcggcgcgcgcgtgtcggtgtcgcgcgagggcgcggag
ctgtgcgcggcggcggcgcgcgcgctgctgcacgcgcaccagcggcgccggcccgcgcac
cccccgcaccacccgcaccacccgcaccaccaccacccccgcgccatacagaaacacgcc
gccgaccactag
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