Manduca sexta (tobacco hornworm): 115445009
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Entry
115445009 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115445009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115445009
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115445009
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115445009
mRNA degradation factors
3'-5' decay
Ski complex
115445009
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
Ski2_N
ResIII
MTR4-like_stalk
ATPase_2
Motif
Other DBs
NCBI-GeneID:
115445009
NCBI-ProteinID:
XP_037294202
LinkDB
All DBs
Position
13:13701710..13748309
Genome browser
AA seq
1156 aa
AA seq
DB search
MSRAPLPPSLATRGTTTQSPFLPAGFEEELQKILEGTMQHADIKIDLDNHEPGKFLGEDI
LTIAPGAKECVLFAEDGFTLLDQEAEEKEKAENKENFDISIKVNLEEVIENNTHLVDLWK
DDEEIKKEKPAKPVKKFEFSSDTSDNDNFLEDTVIRPPVEMPELPVLNITSSAVQTVVTS
TEWAEMIDVSQPVXEFKEKIKDMAHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTV
VAEYAIAMSRRNCTRSIYTSPIKALSNQKYNDFNKLFGEVGLLTGDLQINAKAPCLVMTA
REIFRSMLYCGSDVTRDLEFVIFDEVHYINNAERGYVWEEALILLPAHVSIVMLSATVPN
TLQFADWVGRTKKRMVYVVSTPKRPVPLCHYLYTGSGGKSKHERFMVVDQDGNFQLRGYN
EAVAAKKSRENEYKKSFGPKGGKQMSNSKAEQTMWVAFIDHLKQKDKLPVVAFTLSRNRC
DQNAQNLVSVDLTTAKEKGHIRSFFQRCLQRLKEPDRRLPQVIRLQRVLENGIGVHHSGI
LPLLKEIVEMLFQSGYVKILFATETFAMGVNMPARTVVFDEVTKFDGVQRRTLAPAEYIQ
MAGRAGRGLDDTGTVIILCKDGVPDLVTLKGMMMGTPQKLSSQFRLTYAMILSLLRAATV
SVEGMMQRSFREFHQLCQADNYKKQLQLAEKEYSEKCSTPLPAHLAPLTSFYDTASLYID
LMNEFMPILLNQPKVAKELAPGKIMIVSAGPYINQLGIFLNGNGPRQTPYKVLVLNTAEQ
DTNRYNFEVDDNWYRMLSFSVMYDGIGTEESTLDHTILCIAPKNIIAITKMDLKIDANII
IQDWEKRQMPRFKDAPVGSSCAGAVQELSRLSHAVRSGATQLPQVNLTQSLALTTGEILD
ALTQMKTLTAVLEQQKKSTDIANFKSEFAIIYERKQAEKKRDKYKRLLSFENLALYPDYQ
RRLLVLKELNYIDEHDNVILKGRVACCMGTNELIISELVFRNVFTDKNPAEIAALLSCFV
FQARTQVEQPLTDKLDEGVKAIEAIDAELAKVESKYMINQFEGQQERLNFGLVRVVYEWA
LEKPFAEIMELTDVQEGIIVRCIQQLHELLVDVKDAAVAIGDPQLQAKMMEASTAIKRDI
VFAASLYTTQKEAVTI
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgggcgcccctgcctcccagcctcgccactagaggcacaaccacacaaagtcca
tttttaccagctggctttgaagaggaactgcaaaagattttggaaggaacaatgcaacat
gctgacattaaaattgatttggataatcatgagcctggcaaatttttgggtgaagacatc
ttgaccatagctcctggggccaaggagtgtgttttgtttgcggaagatggcttcactctc
ctggaccaggaggcagaggaaaaagaaaaagctgaaaacaaagaaaactttgatatcagt
attaaagttaatcttgaagaagtcattgaaaataacacacatttagtggatctctggaag
gatgatgaagaaattaaaaaagagaaaccagcaaaacctgtcaaaaaatttgaattttca
agcgacacatctgacaatgacaacttccttgaagacacagtgatcagaccaccagtggaa
atgcctgagcttccagttctgaacatcacctcctcagctgtccagaccgtggtgacatcc
acagagtgggcagagatgatagatgtgtcgcaacctgtgnccgagtttaaagagaaaatc
aaggatatggcacatagctatccatttgaattggataatttccaaaaacaggctatattg
aaactagaagaaggacatcacgtgttcgtagcggcgcacacgtctgccggtaaaacagtt
gtcgctgaatacgctattgctatgtcaagaagaaattgcactagatccatctacacttct
ccaataaaagcactttccaaccaaaagtacaatgacttcaacaagttgtttggtgaggtt
gggttactcaccggtgacttacaaatcaacgccaaagcgccctgtctggtgatgaccgcg
agggagatcttccggtcaatgttgtactgtggttccgatgtcactagagatctcgagttt
gtgatatttgatgaagtgcactatattaataatgctgagcgaggctacgtatgggaggag
gcgctgatcctcctgccagcgcacgtgagtatagtgatgttgagcgccacggtgcccaac
acgctgcagttcgcggactgggtgggccgcaccaagaaacggatggtgtacgtcgtgtcc
acgccgaagcgacccgtgccgctgtgccattatctttatacaggatctgggggcaaatca
aaacacgagagatttatggtagtggaccaagatgggaacttccaactaaggggatacaac
gaagctgttgcagctaagaaatccagagaaaatgaatataaaaagagctttgggccaaaa
ggtggaaagcaaatgagcaactcaaaagcagaacagaccatgtgggtagcctttatcgat
catttgaagcaaaaggacaagctccctgtggtcgcattcacactctcacgtaacagatgt
gaccaaaatgcacaaaatctggtgtcagttgatttgaccaccgcaaaagagaagggacac
atacgttctttcttccagagatgcttgcaaaggttgaaagagcccgatagaagactgcca
caggtaataagactgcaaagagtgttggaaaatggcatcggcgtccaccacagcggtata
ttaccgctgctcaaggaaatcgtcgaaatgctgttccaatctggttatgtgaagatcctg
ttcgcgacggagacgttcgcgatgggcgtgaacatgcccgcgcgcaccgtggtgttcgac
gaggtcaccaagttcgacggcgtgcagaggcgcacgctcgcgcccgcagagtacatacag
atggcgggccgcgccgggagaggtctagacgacactggtacagtgataatcctgtgcaag
gacggcgtgccagacctggtcacgctgaagggcatgatgatgggcacgccgcagaaactc
tcctcgcagttcagactcacatacgccatgatcctcagcctgttgagagcggcaacagta
tcagtggaaggcatgatgcaacgttcattccgtgagttccatcaattatgccaagcggac
aactacaaaaagcaacttcaattggcagagaaggagtattctgagaagtgcagtacaccg
ctgcctgcccatttagcgccattgacgtcgttctacgataccgcaagcttgtatatagat
ctgatgaatgagttcatgccgatattgctgaaccaacccaaagtggcgaaggaattggcc
ccgggcaagataatgattgtatcagcggggccgtatattaatcagctcggtatatttttg
aatggcaatggaccccggcagactccatataaagtgttagtactaaacacagcagaacaa
gacaccaacagatataacttcgaagtggacgacaactggtataggatgctcagcttctct
gttatgtacgacggtataggtaccgaagagagtacgctagatcacacaatactgtgcata
gcacccaaaaacataatagctattaccaaaatggatctcaaaattgatgccaacatcatc
atacaagactgggagaagaggcagatgccacggttcaaagacgccccggtggggtctagc
tgcgcaggcgcagtgcaggagctgtcgcgactgtcgcacgcggtgcggtcgggcgccaca
cagctgccgcaagtcaatctcacgcagtcgctcgcactcaccaccggcgagatacttgat
gcgctcacgcagatgaagacgcttactgctgtactagaacaacaaaagaaaagcacggac
atagcgaacttcaaatcggaattcgcgataatctatgaacgcaagcaagcggagaagaaa
cgtgataagtacaagagattgctctcgttcgagaacctcgctctctacccggactaccaa
cggaggctgctcgtgttgaaagaactgaattacattgacgaacatgacaatgttatatta
aaaggtcgcgtggcgtgctgcatgggtaccaacgagctcatcatatcggagctggtgttc
cgcaacgtgttcaccgacaagaacccggcggagatcgcggcgctgctcagctgcttcgtg
ttccaggcgcggacgcaggtggagcagccgctcaccgacaaactcgacgagggcgtgaag
gccatcgaggcgatcgatgctgagttggcgaaggtcgagtccaaatatatgataaatcaa
ttcgaaggtcaacaagaaagactcaatttcggtctagttagggtcgtatacgaatgggca
cttgaaaagccattcgcagagattatggagctcacggatgtgcaagaaggaattattgtg
aggtgcatacaacaactgcacgagctcctagtagacgtgaaagacgcagcggtagctatc
ggcgatccgcagttacaagcaaaaatgatggaggcttctaccgcaatcaagagagacatc
gtgttcgcggccagcctctacaccacacagaaagaagctgtcaccatctag
DBGET
integrated database retrieval system
