Manduca sexta (tobacco hornworm): 115445199
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Entry
115445199 CDS
T07401
Name
(RefSeq) probable ATP-dependent RNA helicase pitchoune
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
msex
Manduca sexta (tobacco hornworm)
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msex03041
]
115445199
03009 Ribosome biogenesis [BR:
msex03009
]
115445199
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115445199
Spliceosome [BR:
msex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115445199
Ribosome biogenesis [BR:
msex03009
]
Eukaryotic type
90S particles
Helicases
115445199
Pre-60S particles
115445199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
Cas3-like_C_2
SWI2_SNF2
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
115445199
NCBI-ProteinID:
XP_037296993
LinkDB
All DBs
Position
21:6236473..6239829
Genome browser
AA seq
482 aa
AA seq
DB search
MDEQTLPKFKELKENVSRETLQAVKAMGFKRMTKIQAQVIPKALEGADIVATAKTGSGKT
LAFLIPIVEIVAKFLEMKLQKTCCIIVSPTRELATQTYSVFKDLTSRYEDMNSSLVIGGE
HRKKQSAELAQGVHVVIATPGRLFDHMRTKEFDYKHVKCLVLDEADKIYQYGFEEDLKQI
INRLPKERQTMLFSATLSERTEALISSAMKENLYNINTDQDDLRATVEGLKQGYAVCETE
YRLWWLHKLLKKIQKYKVMVFFSSCKSVVFHYTFFNEYCKSSVLCIHGKMNQADRTATMT
KFHEADKVALFCTDLAARGLDIPAVDWIVQFDPPADANEYIHRVGRTARGISSVGNAVLL
LRPEEIDFISYLQESKIYLDKYETWDSFFNLEPKLQAAMSDPNFHQMAVEAFEGYIRAHE
VKKFKQIFNIVNIDLNKVANSFGLKEKPDVDIHIGFSKKHRPRKRMAAVLAAKGDSTKRL
RS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaaacgcttccaaaattcaaggagttaaaggaaaacgtttctcgtgaaaca
ctgcaagcagttaaggccatgggattcaaacgtatgacgaaaattcaagcacaagttatt
ccgaaagctttggagggagcagatatagtagccacagcgaagaccggttcaggcaaaact
ttggcatttcttattcctatagtagaaattgtggcaaaattcttagaaatgaaattgcaa
aaaacatgttgtataatagtgtcccctactagagaattagctacccaaacatattcagtt
ttcaaagatctgacatctcgatatgaagatatgaattcatcactggtgattggaggggag
catagaaagaagcaaagtgctgaactggcacaaggtgtccatgtagtaatagcgactcct
ggaagattatttgaccacatgcgaacaaaggaattcgattataaacatgtaaaatgcttg
gttttggatgaagcggacaagatttatcaatatggctttgaagaagacttaaaacaaatt
ataaaccgtcttcctaaggaaaggcaaacaatgctgtttagtgccacattatcagagagg
actgaggcactgatctcttctgccatgaaagaaaatttatacaatattaatactgaccaa
gatgatttaagggctacagttgaaggattgaaacaaggatatgctgtatgtgaaacagaa
tacagactttggtggttgcataaattactgaagaagatccaaaaatataaagtcatggtg
ttcttttctagttgtaaatcagttgtgtttcattacacattttttaatgaatattgtaaa
tcttcagtactgtgtattcatggaaaaatgaatcaagcagatagaacagccaccatgaca
aagttccatgaagcagacaaagtggcgttgttttgtactgatttggcagccagaggtttg
gatatacctgcagtggattggatagttcagtttgatccacctgcagatgccaatgaatat
atacatagggtggggagaacggcaagaggtatcagttcagtaggaaatgcagtattactt
ctaaggccagaggaaattgattttatatcctatttgcaagagtcaaaaatatatttagat
aaatatgaaacttgggatagttttttcaatctagaacctaagttgcaggcagccatgtca
gatcctaactttcatcaaatggctgttgaagcttttgaagggtatatcagagcacatgaa
gttaaaaaatttaagcaaatattcaatatagtgaacatagacctcaacaaagtagcaaat
tcttttggcttgaaagaaaaacctgatgttgatattcacataggttttagtaaaaaacat
cgaccacgaaagagaatggcggcggtccttgcagccaaaggagattccacaaaacgcctg
aggtcatga
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