Manduca sexta (tobacco hornworm): 115446893
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Entry
115446893 CDS
T07401
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115446893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115446893
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
115446893
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
PIN_4
CSD2
Rrp44_S1
Dis3l2_C_term
PIN_TASOR
Motif
Other DBs
NCBI-GeneID:
115446893
NCBI-ProteinID:
XP_037296481
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All DBs
Position
20:complement(13235170..13257578)
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AA seq
978 aa
AA seq
DB search
MWTTKTFLTKTKRGNIIKIVREHYLRDDLLCGSAACNTCPHKDDELVLESEPTSICALFD
YPHYLILDTNVVLHQIDVLEEDALKNVIILQTVLEEVKHRNTAVFQRLLEIISNKNRKFY
SFVNEHHKDTYIERNPGEKQNDRNDRAIRRASAWYETHLNINSVVGQSPRIVLLTDDEKN
RNIAQNEGIVCCNVKDYIENVSGFVGLSDKLSKNVIPESCSKDALYPAHLTPTQVHEGIR
NGKLYQGTFHASRDNFLEGTANINGFDKPILLQGHIGINRAVDGDVVAIELLPEEEWRRP
SDIVLEDKADDPGDFLEEETLLLNSVKADKAKEEITPTGKVVGIIRRKWRQYCGILMPSR
LPGATRHLFTPAEKRIPRVRIETRQSDALAAQRILVALDSWPRNSRYPLGHFVRALGPIG
DKNAENEVILLEHDVPHARFSEAVLSCLPPDNWTIPEEEIKKRVDLRSTCVCSVDPPGCT
DIDDALHARALAGATRAGLKRFEVGVHIADVTYFVRPDTPLDKEAAARSTTVYLVDRRID
MVPDLLSSNLCSLRGGEERLAFSCVWEIDENANILATRFHKSVIKSAAAMTYEEAQLAID
DSSRADAVATSLRTLNALAKRLKRKRLDQGALLLASPEIRFQVDSETHDPIEVQAKKLVD
TNSMVEEFMLLANISVAEKLLQDFPQCALLRRHPAPPPANFDTFLKAARQQGFEIDVSTN
KAFSKSLDEAVIPGRPYFNTLLRIMATRCMQQAVYFVSGSVSQDEYYHYGLACPIYTHFT
SPIRRYADVMVHRLLAAALGCDTTHAALVDARRGEAQCDALNYRHRQAQHAGRASVALNT
HILFRHKVAIESAVVLAVKRNALQVLIPKYGLEGPLYLPSDKFKYNEEEHYQVCDDVILK
TFDEITVRLSLDRSNLQHQKLVFQLVKPYVPDFSYVVEDEGKMDVDEANQKKAKGKGDEK
KRKDPANTKASKKKKAKK
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgtggacaacaaagacgtttttaaccaaaacaaagcgcggaaacataataaaaattgtg
agggaacattacttgcgggatgatttactgtgtggttctgccgcttgcaacacttgccct
cataaagacgatgaattagttttggagtctgaaccaacatccatctgcgcattgtttgac
taccctcactatttgatattggacacaaatgtagttctacatcaaattgatgttcttgaa
gaagatgcattgaaaaatgttataattctgcaaactgtattggaggaagtgaaacacagg
aatacagcagtgtttcagagattgttagaaataataagcaataagaataggaagttttat
tcatttgtcaatgaacaccataaagacacttacattgaacgaaatcctggcgagaaacag
aatgatagaaacgacagggctattcggcgggcctctgcatggtatgagacgcacttgaat
ataaacagtgttgttggacagtctccgaggatagtgttgctgacggatgatgaaaaaaac
agaaatattgctcaaaatgaaggcattgtgtgttgcaatgtcaaagattatatagaaaat
gtatcagggtttgttggactcagtgataagttatcaaagaatgttataccggaaagttgt
tcaaaggacgctctgtacccagcccacttgacacccacacaagtacacgaaggtataagg
aacggcaagctttatcagggtacctttcatgcgtcccgcgataatttcttggagggcact
gcaaacatcaatggatttgataagcctatcctactacaagggcacataggtatcaacaga
gctgtagatggtgatgtagttgccattgaacttctaccagaagaagaatggcgtaggcct
agtgacattgttttagaagacaaggctgatgaccctggagattttttggaggaggagacc
cttcttttaaactcggtgaaagctgataaggcgaaggaagaaatcactcccacagggaaa
gtggttggcattattagaaggaaatggaggcaatattgcggtattttgatgccgagccgg
ttacctggcgcgacgcgtcacctgttcacgccggcggagaagcgcatcccgcgcgtgcgc
atcgagacgcggcagagcgacgcgctcgcggcgcagcgcatcctcgtcgcgctcgactcg
tggccgcgcaacagccgctacccgctcggacacttcgtgcgcgcgctcggacccataggt
gacaagaacgcggagaatgaagtaatccttctagaacatgatgtacctcatgcgcgattc
agcgaagctgtgctgtcttgtctgcctccagataactggacgatacccgaagaggaaata
aaaaaacgagtagacctccgttcgacctgcgtgtgttccgtggacccgcccggctgcacg
gacatcgacgacgcgctgcacgcgcgcgcgctggcgggcgcgacgcgcgccgggctcaag
aggttcgaggtgggcgtgcacatcgcggacgtgacgtacttcgtgcgccccgacacgccg
ctcgacaaggaggccgcggccaggtccaccaccgtgtacttggtagatcgaaggatcgat
atggttccagatctgttgagttccaacttgtgttcgttgcgcggcggtgaagagagactt
gctttctcctgcgtgtgggagattgatgaaaatgctaacattttggccacgaggttccac
aaaagcgtcataaagtcagctgcggcgatgacgtacgaggaggcgcagctcgcgatcgac
gactcgtcccgcgcggacgcggtggccacgtccctgcgcacgctcaacgcactcgccaag
cgactcaagcgcaagcggctcgaccagggcgccctgctcctcgcctcgccagagatcagg
ttccaggtggattccgaaacgcatgaccctatagaagtgcaggcgaagaaactggtagac
acgaactcgatggtggaagagttcatgttgctggccaacatcagcgtggcggagaagttg
ttgcaggacttcccgcagtgtgcactcctgaggaggcatcccgcacccccacctgccaac
ttcgacaccttcctcaaagcggctaggcaacagggcttcgagatagacgtgtcaacgaac
aaagcattctctaaatcactggatgaagccgtaattccgggccgtccgtacttcaacacg
ttgctgcgcataatggcgacgcgatgcatgcagcaagcggtgtacttcgtcagcggctcc
gtctcacaagacgagtactaccactacgggctcgcgtgtcctatatacacacacttcact
tcgcctatacgtaggtacgcggacgtgatggtgcaccgcctgctggcggcggcgctcggc
tgcgacaccacgcacgccgcgcttgtggacgcgcgccgcggggaggcgcagtgcgacgcg
ctcaactaccggcaccgccaggcgcagcacgccggccgcgcctccgtcgcgctcaacacg
cacatattgttcaggcacaaagtagctattgaaagcgctgtagtactcgccgtgaaacgg
aacgctctacaggtgttgataccaaaatatggcctcgaagggcccttgtatttgccgtcg
gacaagttcaaatataatgaggaggaacattaccaagtatgcgacgatgttatcctaaag
acctttgatgagatcactgtacgcctaagccttgataggtccaacttgcagcatcaaaaa
ctagtgtttcaattggtgaaaccgtacgtgccagattttagctacgtggtggaggatgaa
ggcaaaatggacgtggatgaagcgaatcagaaaaaagcgaagggcaaaggtgatgaaaag
aaaagaaaagatccggctaacactaaagccagcaaaaaaaagaaggctaaaaaataa
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