Manduca sexta (tobacco hornworm): 115448173
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Entry
115448173 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msex
Manduca sexta (tobacco hornworm)
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msex03016
]
115448173
Enzymes [BR:
msex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
115448173
Transfer RNA biogenesis [BR:
msex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115448173
Prokaryotic type
tRNA splicing ligases
115448173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF5077
Motif
Other DBs
NCBI-GeneID:
115448173
NCBI-ProteinID:
XP_030031377
LinkDB
All DBs
Position
Unknown
AA seq
496 aa
AA seq
DB search
MVVRQYNEELKYLEKINPYCWKIKMGFQPNMNVEGVFYVNNTLEXLMLDELRNACRPGMT
GGFLPGVKQIANVAALPGIVGRSVGLPXVHSGYGFAIGNMAAFDMSXGFDINCGVRLLRT
NLHEKDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNARDMEEALEMGMDWSLREGYVWAED
KEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKYAAGKMGLE
RTGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIHSVEGQDYLKA
MAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKVEEHIVDGKVKT
LLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTHQGMTETFGSTCHG
AGRALSRAKSRRNIDYMDVLSKLESMGISIRVASPKLVMEEAPESYKNVTDVVNTCHSAG
ISKKTVKLRPIAVIKG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtaaggcagtataacgaggagctgaaatatttggagaagatcaacccatattgt
tggaaaattaaaatgggattccaacctaatatgaatgtcgaaggagtattttatgtgaat
aatacacttgaanaactaatgttagatgaactgcgaaatgcgtgcaggcctggcatgacc
ggagggtttcttcctggcgtgaaacagatcgcaaatgttgcagccttgccgggcatcgtt
ggccggtcagtgggcttaccgnacgttcattcgggctatggatttgctataggaaacatg
gctgcttttgacatgtcannaggatttgatattaattgcggtgtacgtctactaagaacc
aatttgcatgaaaaagatgttcaaccaataaaggaacaattagcgcagagtttatttgat
cacatacctgttggtgtgggttctaaaggtataattcctatgaatgcacgtgacatggaa
gaagctttagaaatgggcatggattggtctctgcgtgaaggctacgtgtgggctgaggat
aaagagcattgtgaagaatatgggaggatgttaaatgctgacccatccaaagttagttta
agagccaaaaaaagaggattgccacagctaggtacgctgggagctggcaaccattatgca
gaaatacaagttgttgatgaaatatatgacaaatatgctgcaggaaaaatgggtttagag
aggactggtcaagtttgtgtgatgattcattctggcagtcgagggtttggtcatcaagtt
gctactgatgctcttgtacaaatggaaaaagccatgaaaagagacaaaattgaaaccaat
gacagacaactggcttgtgcgcgaattcattctgttgaaggtcaagactacttgaaggct
atggcggcggcggctaacttcgcatgggttaaccgtagttccatgaccttcttgactcgc
caagcatttgccaaacagtttaaaatggctcctgatgacttggacatgcatgtcatttat
gatgtctcccacaatatagccaaggttgaagagcacattgttgatggaaaagtaaaaact
ttgcttgtgcacagaaagggttctacaagagcattcccgccgcaccacccattaattccc
gttgactatcagcttactggacaacctgtgctgattggtggtactatgggaacttgcagc
tacgtgcttaccggcacacaccaaggcatgactgagaccttcggaagtacttgccatgga
gctggccgagctttatcgcgtgcgaaatctagaagaaatatagactacatggacgtgctc
tcgaagttggagtccatgggtatctctattagagttgcttcacctaaactagtgatggaa
gaagctccagaatcgtacaaaaacgtaacagatgttgttaatacatgtcattctgcagga
ataagcaagaaaactgttaaattaaggcctattgccgtcatcaaagggtaa
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