Manduca sexta (tobacco hornworm): 115448263
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Entry
115448263 CDS
T07401
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115448263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115448263
03041 Spliceosome [BR:
msex03041
]
115448263
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115448263
Spliceosome [BR:
msex03041
]
Complex B
Other components
Prp19-related factors
115448263
Complex C
115448263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
DHR-2_Lobe_A
NRDE-2
Mad3_BUB1_I
PPR
TPR_10
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
115448263
NCBI-ProteinID:
XP_030031508
LinkDB
All DBs
Position
Unknown
AA seq
840 aa
AA seq
DB search
MPLLDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKAAPKHEINMVYERALKEL
PGSFKLWYNYLKLRRSQIRWSCITDSCYEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITATRKAFDCALRALPITQHHRIWPLYLSFLKKHNIPETAVRVFRRYLKLCPEDTEEYI
DYLISIGKLDEAALKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEIAKKPNPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYENNEQIEDARLIFEKATQ
VNYAKVDDLASVWCEWAEMEIRHENYEQALKLMTRATVLPSRKVAYHDDSETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLEKCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPDDK
AREMCIRFSEMETRLGEIDRARAIYGHCSQMCDPRITAEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVQSKG
NIMFVRGETQGLKESSDKVVNPDEIDIDEESGNSEDEGEDEPVQKKDIPAAVFGGLMKED
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgcctttactagacggcaaagaaattgatatatttttcagtgaagaagatcttccctat
gaagaggaaatattacggaatcctttctctgtcaaacattggctcagatacatagagcac
aaaaaagcagcaccaaaacatgaaattaatatggtatatgaaagagctcttaaagaactg
ccaggttcatttaaattgtggtacaattatttaaaattgaggaggagtcaaattaggtgg
agctgtataactgattcctgttatgaagatgttaacaattgctttgagcgctctctagtc
tttatgcacaaaatgcccaggatatggatggattactgtacctttttaacagatcaatgt
aaaataacagctacaaggaaagcatttgactgtgctttgagagcattgccaataacacaa
catcacagaatatggccactctatttgagtttcctaaagaaacataatatccctgaaaca
gcagttagagtttttcgtagatatcttaagttatgcccagaagacactgaagaatatatt
gactacttaatatccattggcaagcttgatgaagctgctcttaaattagcacagatagtc
aataatgaaaacttccaatctaaacatggaaaatctaatcatcagctttggaatgagctt
tgtgaacttatatctaaaaatcctgatcaaatacattctcttaatgtagatgctattatc
agaggtggacttagaaggtacaccgatcaattgggacacctatggaactctttggcagat
tattatgtaagaagtggtctttttgaaagagccagagacatttatgaagaagctattcaa
acagtaacaactgttagagattttacccaagtgtttgatgcatatgcacagtttgaagaa
cttagtcttagtaaaaaaatggaagaaattgcaaaaaaacctaatccaactgaagatgat
gatattgacttggaattacgcctagccagatttgaatatcttatggagaggaggttgcta
ttacttaattcagttctgctcagacagaatccacataatgttgcagaatggcataaaaga
gtaaagttatatgaaggtaaaccacatgaaattattgatacttatacagaagctgtacaa
actgtagacccaaaattggctgtgggtaaattgtacacattgtgggttggatttgcaaaa
ttctatgaaaataatgaacagattgaagatgcaagattaatttttgaaaaggcaacacag
gtaaactatgcaaaagttgatgatttagcatcagtatggtgcgaatgggctgaaatggaa
attagacatgaaaattatgaacaggcacttaaacttatgactcgagcaactgtacttcct
agtagaaaggttgcttatcatgatgattctgaaacagtacaaatgagattatacaaatca
ttaaaagtatggtccatgtatgcagatttggaagaaagttttggtacttacaaatcttgc
aaagctgtttatgatcacataattgacttaaaaattgccacaccacaaataattataaac
tatggtctatttttggaagaacacaactactttgaagaagctttcagagcttatgaaaaa
ggtatagcattgtttaaatggcctaatgtgtatgatatttggaatacatatttaacaaaa
tttttaaagagatatggtggcacaaagcttgagagagctagagacttgtttgaacaatgt
cttgaaaaatgtcctcctgaatttgcaaaatcgatatttttgctctatgcaaaattagaa
gaggagcatgggttagctagacatgccatgtcagtatatgagcgtgccaccactgcagtc
cttccagaacaaatgttcgaaatgttcaacatctacattaaaaaggctgcagaaatctat
ggagtacctaaaactcgtcaaatctatgaaaaagcaattgaaactcttcctgatgacaaa
gcaagagaaatgtgtatacgcttctcagaaatggaaacacgtttaggtgaaatagaccgg
gccagagcaatatatggccactgtagtcaaatgtgtgatccaaggattacagcagagttt
tggaatacctggaaagaatttgaagttagacatgggaatgaagatacaatgagagaaatg
cttagaattaaaagaagcgtgcaagccacatataatactcaggttaatatgatgtctgca
caaatgttaagttcagctgcacaagcagctggtactatttcagatcttgctccaggcatg
aaagatggaatgagaatgttggaagcgaaggctgcagaaatggctgttcaaagcaaagga
aatattatgtttgttagaggggaaacacagggtctcaaagaaagctcagacaaagtggtc
aatcctgatgaaattgacattgatgaggaatcaggcaacagtgaagatgagggagaagat
gaacctgtgcaaaaaaaagatattccagctgcagtgttcggagggttgatgaaagaagat
taa
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