Manduca sexta (tobacco hornworm): 115448344
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Entry
115448344 CDS
T07401
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03013
Nucleocytoplasmic transport
msex03015
mRNA surveillance pathway
msex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115448344
09122 Translation
03013 Nucleocytoplasmic transport
115448344
03015 mRNA surveillance pathway
115448344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115448344
03041 Spliceosome [BR:
msex03041
]
115448344
03009 Ribosome biogenesis [BR:
msex03009
]
115448344
03012 Translation factors [BR:
msex03012
]
115448344
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115448344
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115448344
mRNA cycle factors
Stress granule specific factors
115448344
Spliceosome [BR:
msex03041
]
Complex C
Other components
EJC/TREX
115448344
Ribosome biogenesis [BR:
msex03009
]
Eukaryotic type
90S particles
Helicases
115448344
Translation factors [BR:
msex03012
]
Eukaryotic type
Initiation factors
eIF-4
115448344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Cas3-like_C_2
TniB
UvrD-helicase
AAA_30
Utp25_C
Motif
Other DBs
NCBI-GeneID:
115448344
NCBI-ProteinID:
XP_030031609
LinkDB
All DBs
Position
13:11995392..11998447
Genome browser
AA seq
405 aa
AA seq
DB search
MSASEVSFNRKIISEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQ
RSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLILSPTRELATQIQKVI
LALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVL
DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDEL
TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTQKMQEANFTVSS
MHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG
RSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgtcggaagtgtcgtttaaccgtaaaataatatctgaagatttgtcgaacgta
gagttcgatactagcgaagatgtagaagtaatcccaacctttgattctatgggacttcgc
gatgagttacttcgtgggatatatacttacggtttcgagaagccgtcggcgattcaacaa
cggagcatcctgccgatagttaaaggcagggatgtaatcgcacaagcacagtctggtacg
ggtaaaaccgccacattctcgatctcaatactgcagtccctggacacgacgcttagagag
actcaggtgctgatattgtcgcccactcgcgagttggccacacagattcagaaggtcata
ctggcgctgggtgacttcatgaatgtacaatgtcatgcttgtatcggtggcactaatctc
ggcgaggatatcaggaagctggattatggccagcatgtggtctctggtacgcctggtaga
gtgtttgacatgataagacgtcgagtgttgcgtacaagatcaataaaaatgcttgtgctt
gatgaagctgatgaaatgctgaacaaaggttttaaagaacagatatatgatgtgtaccgt
tacctgccaccagcgactcaagtggtactcatctctgcaacactgcctcacgagatcctc
gagatgacctcaaaattcatgactgatcccattaggattttggtaaaacgtgacgagttg
acactggaaggcatcaaacagttcttcgtagcggttgagcgtgaggagtggaagtttgac
acgctatgtgacctgtacgacaccctcactattacacaagccgtgatcttctgcaacacc
aagagaaaggtggactggctgacacagaagatgcaggaagccaacttcacagtcagttct
atgcatggagacatgccacagaaagaaagagataatattatgaaagagttccggtctgga
cagagccgagttctgatcactaccgacgtgtgggcccgcggtatcgatgtccagcaggtc
tctctagttatcaactacgacctgcccaacaaccgtgagctgtacatccacaggatcggc
aggtcgggccggttcggacgcaagggtgttgccatcaacttcgtcaagtctgatgacatc
aggatcctgagagatatcgagcagtactactccacacagattgacgagatgccaatgaat
gttgctgatttaatataa
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