Manduca sexta (tobacco hornworm): 115449392
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Entry
115449392 CDS
T07401
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115449392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msex03041
]
115449392
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115449392
Spliceosome [BR:
msex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115449392
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
Flavi_DEAD
AAA_19
AAA_30
nSTAND_NTPase5
T2SSE
PhoH
Cas3-like_C_2
nSTAND3
SRP54
Motif
Other DBs
NCBI-GeneID:
115449392
NCBI-ProteinID:
XP_030033058
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All DBs
Position
23:6833491..6838876
Genome browser
AA seq
886 aa
AA seq
DB search
MDKSSKRRYSSSSSDSAEESRKNDLKERDEFAKRLKKRDEEKVKKVTEATSKRSYEEAAK
RLKLEAEDRDKILPKLRVQSRRKYLEKRKDDKVVELEADIADDEYLFDESILTKRERQER
EHKKVLLKLAKEHEKARELENVQRYHMPQDLGKGEKGEYIEVDENEKLPHSEQQKWEQEQ
IKSAFFKFGAKDAKAKDEYELLLDEQIDFIQALKMEGDDDKTEKEEKTEYQKMRMTIEET
KKSLPIYSFKESLIEAIKKYQILIVEGETGSGKTTQIPQYLLEAGFTKDSKKIGCTQPRR
VAAMSVAARVAQEMNVKLGNEVGYSIRFEDCTSDRTVIKYMTDGTLHREFLSEPDLASYS
VMIIDEAHERTLHTDILFGLVKDITRFRPDLKLLISSATLDAEKFSNFFDDAPIFRIPGR
RFPVDIYYTKAPEADYVDASVVSVLQIHATQPLGDILVFLTGQEEIETCVEMLQERTKRI
GKKLKELLILPVYANLPSDMQAKIFEPTPEGARKVVLATNIAETSLTIDNIIYVIDPGFA
KQNNFNSKTGMESLMVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYKYELEDNTIPEI
QRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKAGRRM
AEFPTDPMLAKMLLASEKYKCSEEIVTIAAMLSVNSSVFYRPKDKIIHADTARKNFFHHK
GDHLTLMNVYNQWVASDYSVQWCYENFVQYRSMKRARDVREQLVGLMERVEIEMMSSVAD
DTNIRKAITAGYFYHIAKFSKGGHYKTVKHNQTVMIHPNSALFEELPRWVIYHELVFTSK
EFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTVGKSSGTQ
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggacaaatcaagcaaacgacgttattcttcatcaagttccgatagcgctgaagaaagt
cggaaaaatgatctaaaagaaagggatgaatttgccaaacgattgaaaaaacgagatgaa
gaaaaggtaaagaaagtaacagaggcgactagtaaaagatcatacgaagaagctgcaaag
cggctcaaattagaagccgaggatagagataaaatcttaccaaaacttcgagtgcaatcg
cgacgtaaatatttggaaaaaagaaaggacgataaagttgtagaattagaagccgatata
gctgatgatgaatatttatttgacgaaagcatcttaacaaaaagagaaagacaagagagg
gaacataaaaaagttctattaaaattagcaaaagaacatgagaaagcgagagaattagaa
aatgttcaaaggtatcatatgccacaagacttggggaaaggcgaaaaaggtgaatacatt
gaagttgatgaaaatgaaaagttgccacattcagaacaacaaaaatgggaacaagaacaa
atcaaatcagcattctttaagtttggtgcaaaagatgcaaaagccaaagatgagtatgaa
ctattacttgatgaacaaattgattttatacaagctcttaaaatggagggtgatgatgat
aagacagaaaaagaggaaaaaaccgaatatcagaaaatgcgaatgacaatagaagaaacg
aaaaagtcactccccatatatagctttaaagagtctttgatagaggcaataaaaaagtat
caaatattgatagtggagggtgaaacaggttcaggaaaaactacacaaataccacaatat
ctacttgaagcaggttttaccaaagatagtaaaaagattggttgcacacagccaagaaga
gtagctgcaatgtctgtagcagccagagtcgcccaagaaatgaatgtgaaattaggtaat
gaagttggatacagtataagatttgaagattgcacttcagacagaacagtaataaaatac
atgactgatggcacacttcatagagaatttctatcagaaccagatttagcatcatacagt
gtaatgattattgatgaagctcatgaaagaactctccatactgatattttatttggtctt
gtcaaagacataactagatttaggccagatttaaaactactaatttctagtgcaacatta
gatgctgaaaaattctcaaatttctttgatgatgcacctatttttagaataccaggcaga
agatttcctgtggatatctattatacaaaagctccagaagctgactatgttgatgcgagt
gttgtttctgttttgcaaatccatgccacccagccactaggtgatattttagtctttctc
acagggcaagaagaaattgaaacttgtgtagaaatgttacaagagaggacaaagagaata
ggaaaaaaattaaaagagcttttaatattacctgtatatgccaatttacctagtgatatg
caagccaaaatatttgaaccaacacctgaaggtgcacgaaaagttgtactagccacaaac
attgcagaaacatcacttacaattgacaatatcatttatgttattgatccagggtttgcg
aagcaaaataactttaattcaaaaacaggtatggagagtttgatggttgtcccaatatca
aaagcgtctgctaatcaaagggcaggaagagcggggcgggtcgccccaggaaaatgtttc
cgattgtacacagcttgggcatataaatatgagttagaagataatactattccagaaatt
caaagaatcaatttaggaaatgctgttcttacgttaaaagctttgggaattaatgacctg
attcacttcgatttcttggatccccctccacatgaaacacttgtattggcattagaacag
ttatatgcccttggagccctcaatcatcatggagaattaactaaagctggcagaagaatg
gcagaatttccaacagatccaatgcttgctaaaatgttgctggctagtgaaaagtataaa
tgttcagaagaaatagtgacaattgcagcaatgttgtctgttaacagttcagttttctat
agacctaaagataaaataattcatgcagacacagcaaggaaaaatttctttcatcataaa
ggagaccatttaacattaatgaatgtttataatcagtgggtagcatcagattattcagta
caatggtgttatgaaaattttgtgcaatacagatcaatgaagagggcccgagatgtacga
gagcaattagtaggtctaatggaaagagtagaaatagaaatgatgtcaagtgtggctgat
gatacgaacattcgtaaagccatcactgctggttacttctaccacattgcaaaattttcg
aaaggtggtcattataaaactgtaaaacataatcagacagttatgattcatcctaacagt
gcactatttgaagaattacctcgctgggttatataccatgaactcgtttttacatctaaa
gaattcatgagacaagtcacagaaattgaaagcaagtggcttctggaagttgcgccgcac
tactacaaatctaaagaattagaggattcaacaaataaaaagatgccaaaaactgttggc
aaatcttcaggcacccaataa
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