KEGG   Manduca sexta (tobacco hornworm): 115449841
Entry
115449841         CDS       T07401                                 
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
msex  Manduca sexta (tobacco hornworm)
Pathway
msex03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:msex00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    115449841
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msex03019]
    115449841
Messenger RNA biogenesis [BR:msex03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     115449841
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 CSTF1_dimer WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_VPS8 NBCH_WD40 eIF2A Beta-prop_SPT8 WDR90_beta-prop_4th Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_WDR75_2nd Beta-prop_Vps41 Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C RMC1_N Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st PEP5_VPS11_N Beta-prop_HPS5 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 115449841
NCBI-ProteinID: XP_030033588
LinkDB
Position
26:complement(4167038..4171742)
AA seq 433 aa
MKENNGEVDTRNVVKNRELLYRMIISQLYYDGFQPIAATLAAAVHADPPCPPSDRLLNLM
MVGLQNEPDRKDRLAATSVAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMACR
AGAFSSCGQLVATGSVDASIKILDVERMLAKSAPEEVDPGREQQGHPVIRTLYDHTDEIT
ALDFHPREQILVSASRDCCIKLFDITKASAKKAYKSITDAEPVLCVAFHPLGDHIIASTT
HPVIRLYDVTTSQCFVCPIPSHHHKKQVNSIKFSPNGKYFASGSADGSVKLWDTVSNRCF
NTFINAHEGAEVCSVAFTRNSKYLLTSGLDSSIKLWELASSRCLIQYTGAGTTGKQDHHA
QAVFNHTEDYVMFPDEATTSLCTWHSRSASRCQLMSLGHNGAVRYIVHSGTAPAFLTCSD
DYRARFWYRRNTH
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgaaagaaaataatggagaagtggatacaagaaacgttgttaagaaccgagagttgctg
tatcggatgatcataagtcaattatattatgatggatttcaaccgatagctgcaactctt
gctgcggctgtgcatgctgatccaccatgcccgccgagtgacagattattgaatctgatg
atggtgggtctccaaaatgaacctgacagaaaagaccgcctggctgctacaagcgtggcg
gagcacctgcttgggactactggttttgatcttgagtatgagatggacgcctcatcacta
gcgccggagccagcaacgtatgagactgcttatgtgacgtcacacaagatggcatgtcgc
gccggcgcattcagttcctgcggacagcttgttgccactggcagtgtggacgctagtatt
aagatcttggacgtggagcgcatgttagctaagtcggcgcctgaggaggtggaccctgga
cgtgaacagcaaggacatccagttataaggacattgtacgatcatacagatgaaataact
gctttggactttcacccacgcgagcagattctcgtgtcggcatcgcgggactgttgcatc
aaactgtttgacatcacaaaggcttcagcgaaaaaggcttacaaatctattacagatgca
gagccagtgctctgcgtggcgttccatcccttgggcgaccacatcatagcttccaccact
cacccagtgatccggctgtatgacgtcaccaccagccaatgtttcgtatgtccaataccg
tctcatcatcataagaagcaagttaattccattaagttttccccgaatggcaagtacttc
gcgagcggcagcgcggacgggtcggtgaagctgtgggacaccgtgtccaaccgctgcttt
aacactttcatcaacgcgcacgagggggccgaggtctgctccgtcgcgttcaccaggaat
agcaagtatcttctaacatctggattggactcgtctataaaactgtgggagctggccagc
agcagatgtctcatacaatacactggagcgggcaccactggcaagcaagaccaccacgcc
caagcagtgttcaaccacacggaagactacgtgatgttcccggacgaggcgaccacgtcg
ctgtgcacgtggcactcccgcagcgccagtcggtgccagctgatgtcactcggccacaac
ggtgccgtcagatacatagtccattccgggaccgccccagcgttcttaacttgcagcgat
gactacagagcaagattttggtacaggaggaacacgcattaa

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