Manduca sexta (tobacco hornworm): 115449927
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Entry
115449927 CDS
T07401
Name
(RefSeq) endoribonuclease Dcr-1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
msex
Manduca sexta (tobacco hornworm)
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msex03036
]
115449927
Chromosome and associated proteins [BR:
msex03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
115449927
microRNA pathway
RISC loading complex
115449927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
Dicer_platform
PAZ
Helicase_C
Dicer_PBD
DEAD
Motif
Other DBs
NCBI-GeneID:
115449927
NCBI-ProteinID:
XP_037296641
LinkDB
All DBs
Position
1:4512419..4574263
Genome browser
AA seq
2319 aa
AA seq
DB search
MEPCTSRFTAAEGGTRLAAAASSRNLLVAEYSGFISTRLVCEEAYNIRGLLSEGRRRSIY
VTRKARVALVTYDLKIMTDLQVIGATDPGEVEDWSQEMEVKEVLVATSEVIKHVLEAEVL
KMTDINVMILDSCHLIYKDDSLKYIMKSYKNCPKEKRPRILALTYPLFTSPKKKQAEIKK
DAEVVENDAEDENIEEMSEGISSEEKCTEVENKQEVTQKETEVTQKEEFGVYKNLDDYEM
YEKLEWNISQLEDALCCQMDFAEDIDGGKRISTNLTKPRELIIEYTSAPCRQSLSEEYLD
LEKYMKDTVNDALEFLDDHRHDPTEIYGEELYDEFKNIPDPTTDPRNILKQFLYVLEQLG
PYGADKAAFSLLITLEKLKIKVPYERHFLLLCFCMTTFIKLRGYADYVFSKYDQEWDKIK
AFSTPKVLRFGEILQKFHPNVDKSSNPTARLLKEIEQCDFAKLGDALEDQVNTLEANLKE
IHEYYTDKDQVLINEALEKGNCGVQNEAESHGNKTGHSVKKYGNDKEVSSQSHEANSQDQ
SHANKVGFSRRTGRMRGRRVQRTNAARMQMTLLNPDALCGIVFVKEPLMAKILFMLIVDM
SRCHPKLSYLCAQYCAVEHGTDPLELKECQRQGKKQEDVLKKFRMHECNLLLATPALEEG
IDLPRCNLVLRWDVPPSYRSYLLCRGRARAPRSAAAVLSGAGHGQTDQLLRNVAIYRELD
QIITRKCGCGIQNEPPQVEEDHADTLNNIIKPYVPVLLKNPNKTTNFIENKAQAVKTESI
ENESKKNSDKSDSKNSDENDSKSSDTSDPTDTSEALVRTENNLKNENLVCNKCTGVKPCA
SAECLCVNGSDVKTDVRYEVKSDAEVVASVDLNTAIALINRYCGKLPSDTFTRLAPQWWM
ETVQLPDESGTHRTAYICTLRLPLNCPVKYNIVGHPMPTVVLAKRMVALQACRILHKSGE
LDDNLMPIGKENFKAAELETNSNTDDETNDSARPGTTKRRQYYYKRTAWAFTDCQPVIDT
SDSEIDSPENGAPEATPTENKEIKGSKRNMLYAIVCKLWCALPERYNTRGRRLHAPQHAA
QALGILMARDKPTSLQIPAFPVYTRSGEVRVSVEHVPDADVRVSPRRGRLVRRFMRFVFS
EVLRVRRRGMRLHSDGSTHNNYYIVPTIKTTRPDGTTKIDIDWAFLEVIYRHTEEKKHSE
VENVMLWQQDEEDEGIGEEKTKTKEEGKRKMDNPLLKPGETFVFDAEKYREAVVTPWYRN
QDQPQFFLVAEICWNLTPDSAFPSALHTSFRNYYQSKYGVVLTQPDQPLLDVDHTSARLN
LLTPRYVNRKGVALPVSSERTRRAKRDRLDQKQILVPELCHVHPFAAPLWFATVALPCVL
YRINALLIADEIRRAVAIDVGLGVPKIDEDTMPGFQWPPLDFGWSLAEVLSADSEKNEKK
KQDEMKEKDEKETQETEKEDDQKTLEDEAVEEVVEQKTINDILQEKEQAESEFEIGTWSN
DMASCIPQPREYDEYMEPLPPNLTFCTSASGGADWCSPVEKPKSQYHPSRSYSVANSDYS
YMSSDFDTEDSDSDLDGSDDETDSSSGFCSSKHSNAAMGVRIEYKTAHEAEAVDLERRVK
VNPAPDPDEEDDAQDRMLHAEFIRAGTAPDEHLEKFRTSVSQHEQEIKTNGLIKHDQPIV
EILPELVQPKPALTKHYDQVKLNSLFPYTREKLIFEDGQITIESIEKNKRVLLEVVKKNL
GDEAKTMNCFSMKDVDIDSPGYVDEKIANVGFAASKCEKSTGADLVPYYLDVGGKSKEFD
FDHQPVLEGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKFAITAYLYCAHPNVH
EGKLSHMRSKQVSNLNLYRLGRNKRLGARMIASKFEPHDNWLPPCHRPPPTLHPKAAECQ
EQGPKNETSVDSSGCYIPYNLITQHSIPDKSIADCVEALIGAYLLECGPRGALLFMSWLG
IRVLPLHHVTLPPGAAPRDATHAQDQVRHLTEEWWWKDRRVGSLPPRQDSNGTWIQPVYG
ELKAPPSPLLRYIEDPEGELEQMLSGYDALERTLQYRFQDRSLLLQALTHASHHNNRLSD
CYQRLEFLGDAILDYLITRHLYEDARRHCPGALTDLRSALVNNTIFATLAAKHGFHKYFR
HMSPGLNEVLTKYVKIQEENGHSISEEHYLIQEDEMEQAEDVEVPKALGDLFESVAGAIF
LDSGMSLGAVWRSYVRLMGRELEAFSAAAPKSPVRELLEAEPDTAKFGKPERLADGRRVR
VCVEVFGRGAFKGVGRNYRIAKGTAARCALRHLRTHRQR
NT seq
6960 nt
NT seq
+upstream
nt +downstream
nt
atggagccgtgcacgagtcgtttcacggccgcggagggcggcacgcggctcgcggcggcc
gccagctccaggaacctgctcgtcgcggagtacagcggcttcatatccacaaggctggtg
tgcgaagaggcttataatattcggggcctcctctcagaaggtcgtcgcagatcgatctat
gtgacgcggaaggctcgtgtggcgctcgtcacgtacgacctgaagatcatgactgacttg
caggtgatcggcgcgacggaccccggggaagtcgaggattggagtcaggagatggaggtt
aaggaggtcctagtggccacttcggaagtgatcaagcatgttctagaagcagaagtgttg
aagatgacggacataaacgtgatgatattggacagctgtcatctgatatacaaagatgat
agtttgaaatacataatgaaatcatacaaaaactgtccaaaagagaagagacctcgaata
ctagctctaacatacccgctatttacatccccaaagaaaaagcaagcagaaatcaagaag
gacgcagaagttgtagagaatgatgcggaagatgagaacattgaggaaatgtcagaaggt
atttcaagtgaagagaagtgcacagaagtagagaacaagcaagaagtgacccagaaggaa
acagaagtgacccagaaggaggaattcggtgtttataagaatctggatgattatgaaatg
tatgagaagttagaatggaatatatctcagttggaggatgcgttgtgctgccagatggat
tttgctgaagacattgatggtggcaagaggatatcgacaaacctcaccaagccaagggaa
ctgattatagagtacacttcagctccttgcaggcagtctctctcggaggagtatttggac
ttggagaaatacatgaaggatacagtgaatgatgcgctggagttcttggatgaccatcga
cacgaccccacagagatatatggagaggagttatacgacgaattcaaaaacattccagac
cccacgacggaccctaggaatatattgaagcagtttttatacgttttggaacagttagga
ccctacggagcagacaaggcggcattctctctcctaataacattagaaaagttaaaaatc
aaagtaccttacgaaaggcattttctacttctatgtttttgcatgaccacgtttataaaa
ctaagaggatatgcggactatgtgttcagcaaatatgaccaagagtgggacaagataaaa
gcgttcagtacacctaaagtgttgaggttcggtgaaatcctgcagaagtttcaccccaat
gtcgataagagctcgaatcccacagcaagattgctcaaagagatagagcagtgcgatttc
gcgaagttaggcgatgctctggaagatcaagtgaacactttagaggcgaatttgaaggag
atacacgaatactatactgataaagatcaggttttgatcaacgaagccctggagaaagga
aactgtggggttcaaaacgaagcagaatcacacgggaataaaacaggacactctgttaaa
aaatatgggaatgataaagaagtttcttcccaatcccacgaagcgaattctcaggaccaa
tcccacgcgaataaagtgggattcagtcgacgtaccggtaggatgcgcgggcgcagagtt
cagaggacgaacgcagcgaggatgcagatgacgttgttgaatcccgatgctttatgtggg
attgtgtttgtgaaagagccattgatggcgaaaatactgttcatgctgattgtggatatg
tcccggtgccatccgaagctgtcatatctctgcgcgcagtactgcgcagtggaacacggc
accgacccactggagctcaaggagtgccagcgacaggggaaaaagcaggaggatgttcta
aaaaaattccgcatgcacgaatgcaaccttctcttggcgacgcctgcgttggaggagggc
atagatctgccgagatgcaacctcgtgttgagatgggacgtgccgccgtcttaccgctcg
tacctcctgtgccgcggtcgcgcgcgcgccccccgctcggccgcggccgtgctcagcggc
gccggccacggacagaccgaccaactgctgagaaacgtcgctatatacagagaattggat
cagataataacaaggaaatgcggatgcggaatacagaacgagcctccgcaagtggaagag
gatcatgcggatacactaaacaacatcataaagccatacgtgcctgtattgttaaaaaat
ccaaataaaaccacaaacttcatcgaaaacaaagcacaagcggtgaaaacagaaagtatc
gaaaatgagtcgaaaaaaaattctgacaaaagtgattctaagaattcagacgaaaatgat
tctaagagttctgacacgtcagatcctactgacacgtcagaagctctcgtcaggacggag
aataatctgaagaacgagaatctagtgtgtaacaaatgtactggcgtgaaaccttgtgcg
agtgcggagtgtttgtgcgtcaacggttctgacgttaaaactgacgtcagatacgaagtg
aagtctgacgcggaggttgtagcgagcgtggacttaaatacggctatagctttgattaat
agatactgcggcaagctaccatcagacacgttcactcgcctcgccccgcaatggtggatg
gaaacagtccaactacccgacgagagcggaacacaccgcaccgcgtacatctgcacgctg
cgactgcctctcaactgtcccgtcaagtacaatatagtgggtcacccgatgccgaccgtg
gtgttggctaaacggatggtagccctgcaggcttgcaggatccttcataagtctggagag
ctggacgacaacctcatgcctataggcaaggaaaacttcaaagcggccgagttggaaacg
aacagcaacactgacgacgagacgaacgacagcgccagaccgggcaccaccaagcgtaga
cagtattattacaaacggaccgcgtgggcgttcacagattgtcagccggtcatagacacg
agcgattcagagatagactcaccagagaacggtgcaccagaagcaacacccacagaaaat
aaggagattaaaggcagcaagcgcaatatgctgtacgccatagtgtgcaagctgtggtgc
gccctccccgagcggtacaacacgcgcggcaggaggctgcacgcgccgcagcacgccgcg
caggcgctcgggatactcatggccagggacaagcccaccagcctgcagatccccgcgttt
cctgtgtacacccggtccggggaggtccgcgtcagcgtagaacatgtgcctgacgctgac
gtcagggtgtcgccgcgccgaggccgactggtcaggcggttcatgcggttcgtgttctcg
gaggtgttgcgcgtgcggcggcgcggcatgcggctgcacagcgacggctccacgcacaac
aactactacatcgtgccgacgatcaagacaactcgaccggacggtacaacgaagatagat
attgactgggcgttcctggaagtcatatacaggcatacagaagagaagaagcattcggaa
gtggagaacgtgatgctgtggcagcaagatgaggaagatgagggcatcggggaggagaag
acgaagactaaagaagaaggcaagcggaagatggacaaccccctgctgaagccgggggag
acctttgtatttgacgcggagaagtatcgagaggccgtggtcactccttggtacaggaac
caagatcagcctcagttcttcctagtggccgagatatgttggaatctgaccccggactcg
gcgtttccctccgccctgcacaccagcttccggaactattatcagagtaaatacggagta
gtactcactcagcctgatcagccgttgttggacgtcgaccatactagcgctagactcaac
ttgttgacgcctaggtacgtgaaccgcaagggcgtggcgctgccggtgtcgtcggagcgc
acgcgccgcgccaagcgcgaccgcctcgaccagaagcagatcctcgtgccggagctgtgc
cacgtgcatcccttcgccgcgccgctgtggttcgccaccgtggcgctgccctgcgtgctg
tacaggatcaacgctcttctcatagctgatgagatcagacgagcggtggccatcgacgtg
ggtctcggggtcccgaaaatcgatgaggacacgatgccggggttccagtggcctcctctt
gacttcggatggagtttggctgaggtcttaagcgctgattcagagaagaacgagaagaag
aaacaagacgagatgaaagaaaaagatgaaaaagagacgcaagagacggagaaagaggac
gaccagaagacgctagaagatgaagccgtagaggaagtggtcgagcagaaaaccatcaac
gatatactacaggagaaagagcaggcggagagtgagttcgagataggcacgtggagtaac
gacatggcgtcgtgtataccacagccgcgagaatacgacgagtacatggaacctcttcct
ccgaacctcacgttctgcacatcagcctcaggcggtgcggactggtgcagcccagtggag
aagcccaagagccagtaccatccgagcaggagttactcagtggcgaacagtgactactct
tatatgtccagtgatttcgacactgaagactccgactcggacctggacggaagcgacgac
gagaccgactccagcagtggcttctgcagcagcaagcattccaatgcggccatgggcgtc
cgcatagagtacaagacagcgcacgaggcggaggcggtggacctcgagcgcagggtcaag
gtcaaccccgctccagaccctgacgaggaagacgacgcccaggatcggatgctgcacgcg
gagttcatacgggcgggcaccgcgcctgatgagcacttagaaaaattccgcacatcagta
tcccaacacgagcaagaaataaaaacaaacggactcataaaacacgaccagccgatcgta
gaaattttaccagaactggtccagccgaaaccagctctgacgaaacactacgatcaggtg
aaactaaactccttattcccgtatacgagagagaaactgatcttcgaagatgggcaaata
acaatagagagtatagagaagaataagcgagtgttgttggaggtggtgaagaagaatttg
ggcgatgaagcgaagacgatgaactgtttctccatgaaggatgtggatatagattcgcca
gggtacgttgacgagaagatcgcgaacgtcgggttcgcggcgagcaaatgtgagaagtct
acaggagccgatctggtcccctactatttggacgtgggggggaagagcaaagagttcgat
ttcgaccaccagcccgtgctggaagggcatccggggccgagtcctagtgtcatcctacag
gcgctgacgatgtcgaacgcgaacgacgggataaacctggaacgtctggagactatcggg
gacagtttcctcaaattcgccatcacggcgtacctttactgcgcgcatccgaacgtgcac
gaggggaagctaagtcacatgaggagcaaacaggtgtcgaacctcaacctgtaccgtctg
ggccgcaacaagcgcctgggcgcgcgcatgatcgcgtccaaattcgagccgcacgacaac
tggctgccaccgtgccaccgccctccgcccacgctgcatcccaaggccgcggaatgtcaa
gagcagggtccgaagaacgagacgtccgtggacagtagtggatgttacataccttataat
ctgatcacacaacatagtatacccgacaagtccatagcggactgcgtggaggctctgatc
ggcgcgtacctgctggagtgcgggccgcggggcgcgctgctgttcatgtcgtggctcggc
atccgcgtgctgccgctccaccacgtcaccctgccgccgggggccgcgccgcgggacgcg
acgcacgcgcaggaccaggtcagacacttgaccgaggagtggtggtggaaggacaggcgc
gtcgggtccctgccgccacgacaggattcgaacggaacctggattcagccggtatatggt
gaactgaaggcacctccgtctcccctcctgagatatatagaagatcccgaaggagaactg
gaacaaatgctgtctggctacgacgcgctggagcgcacgctgcagtaccggttccaggac
cgctcgctgctgctgcaggcgctgacgcacgcctcgcaccacaacaacaggctgagcgac
tgctaccagaggctcgagttcctcggagacgccatattggactacttgataacgcgtcac
ctgtacgaggacgcgcggcgccactgtcccggcgcgctcacggacctgcgctcggcgctc
gtcaacaacactatattcgccacgctcgccgccaagcacggcttccacaaatatttccgt
cacatgtcgccgggcttgaacgaagttctcactaaatacgtgaagatacaagaggagaat
ggacactctattagcgaagagcattacctgatccaagaggacgagatggagcaagcggag
gacgtggaggtgcccaaggcactcggagacctgttcgaatccgtcgccggcgccatattc
ctggactcaggcatgtcgctgggcgcggtgtggcgctcgtacgtgcggctgatggggcgc
gagctggaggccttcagcgcggccgcgcccaagtcgcccgtcagggagctgctggaggcg
gagcccgacaccgccaagtttggcaaacccgagcggctagccgacggccgccgtgtgaga
gtgtgcgtggaagtcttcggtcgaggggcttttaagggggtaggcaggaattataggata
gcgaaggggaccgcagcgagatgcgcccttaggcatttacggacacatagacagagatag
DBGET
integrated database retrieval system
