Manduca sexta (tobacco hornworm): 115451423
Help
Entry
115451423 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115451423
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
msex00536
]
115451423
Glycosaminoglycan binding proteins [BR:
msex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115451423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
115451423
NCBI-ProteinID:
XP_037300420
LinkDB
All DBs
Position
28:complement(5544153..5558688)
Genome browser
AA seq
1780 aa
AA seq
DB search
MAQTRGLLLLLFCALCTANGDDEVEFFDFLTAVRNSDLPEGVTRSLGRCQSPVTQELDYS
AFNLNENASLHQLAAGMFYNTFPEDFSILAVVRMPIGTEQNPVFVLYSDAGDEQLQLVVG
DLIELYYEDTRGEPADHELLTYHVNVADGRWHRIALSIKGDSVTLLVDCEIKETMPLDRK
PGSTFNLAGPIVVGLQATPDQYYEGDIELLQFANKPDVAYEMCINIAPDCGSGFGFIHQA
PSNNIFTTGREPVFKPIAYDRTTPIDVDPTTDDPRRYDIGRNRFPDLNQTDNNLWAMAGR
DLTTVRGTWQITDSYNAVTEQHMPLTDSDENSIFGRFTDDQEYLTALTGAPDYTVPIAIG
FSSPGLQETTTPRDVPRVTREDVDPEVELVTTEASYTPITTTEDTDWLTHPPDVGEGNSS
SYDSSETYYDYGTSSTYLGPRGYPGPPGPQGPRGPKGDPGKPGLEGQQGFAGPPGHVFVV
PLQQSGNDKGPDAQSEALRQMLSQHMNAMRGAEGPMGLTGPPGPEGETGAEGPKGEQGEQ
GEPGPPGPRGLQGLPGRVGRRGHAGRDGERGSTGVSGPKGEQGYPGVPGMPGDKGERGIP
GLQGEVGSPGQDGPPGDDGPPGPPGHPGELGPRGFMGPRGFPGLIGYPGIPGTEGPQGTK
GATGQPGPSGPQGQPGAMGPTGAPGPQGPIGAPGIQGPQGKPGISGLPGPEGVPGTPGNP
GQQGSPGEVGPQGPQGMLGFPGMRGLKGDEGPRGLPGDKGDKGIRGIEGEKGEMGPKGER
GLPGEPGPSGNEGPEGQKGAEGPRGETGTSGPTGEKGAIGPPGLQGYPGSQGEKGDKGAS
GRRGRRGNKGIMGLVGTPGDRGEMGPRGYRGPRGRRGSDGAPGPKGDTGQPGPPGSIGER
GPQGVEGVRGYPGAIGPPGADGKPGLPGPVGERGPTGEQGAIGPVGPAGAVGPQGPNGEP
GPPGPPGASGIPGTPGDIGAPGEVGKEGPPGPPGPEGKPGPVGSSGPQGHHGEPGLPGAA
GTPGSKGDMGPTGPPGLRGDKGEPGDPGREGPQGLQGREGPPGPPGPGGQKGEIGEPGAV
GPIGRDGLTGPRGLPGAPGPVGPPGEDGDKGEAGPPGEKGFKGASGEPGPPGAPGVQGLR
GEIGPVGLPGEKGPPGDSGTPGPPGTDGVRGPPGPTGPAGAQGMKGQQGLKGDMGDTGPI
GPVGPAGPAGPPGHRGSKGVQGEPGPRGAEGQHGDIGSPGIPGLPGPQGPEGKLGPRGPT
GPKGDDGASGLQGEPGPKGLPGPEGPKGEAGPAGLPGERGEPGPQGIKGEPGVDGPEGST
GQPGPSGPVGLPGKPGESGMPGSPGTEGPAGLQGSPGLPGEKGDMGPKGAPGEMGPTGPA
GQPGPEGQRGIRGPPGTSGETGAPGVMGPAGPPGKAGPIGSQGIRGEKGNRGPKGHIGDT
GPMGIKGDQGEVGKPGPPGPAGPMGPKGDLGPAGGLGPKGDAGPIGLLGPEGPIGNKGDP
GPEGRPGLPGPPGAPGPPGPPAPPPQIPQELYSSYRRRRSIDASSSMESATEDIFDEDEE
VGWMKDIMAGVIAAQSALEAAKRPRGSRNNPALSCRDLRTSHPNMTDGHYWIDARGGSGI
GRPIRVYCKNYSTCLYSDVTQPGVYNNDNTMHRFSQMNNGFRITYEAESAGSIQLRFLRL
LSNGARQNFTYSCINTKLPQRSDIPADLIRERNLRIFGFSSTEFREPQIVKDDCKEGSGE
ITLEIKTSRTDRLPITDFQPLSFVDAEHQFTFTVGPVCFT
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atggctcagacgagaggactactccttttattgttttgcgcactctgcacggcaaacggg
gacgatgaggtagagttctttgattttctaaccgcggtgaggaatagcgacctccctgag
ggagtgacgcgaagcctcggccgctgtcaatcgccggtaacacaagaactcgactattct
gcttttaacctcaatgaaaatgcctctttacatcaacttgctgctggaatgttctacaac
acttttcctgaagacttctctattttagctgtagttcggatgcctataggtacagaacaa
aatcccgttttcgtattatactccgatgctggcgacgaacaactacaattggtggtgggt
gatctcatagagttatactatgaggacacgcggggagagccagctgaccacgaactatta
acctaccatgtcaacgttgctgatggaaggtggcatcgtatagcacttagtattaaaggc
gactccgtaactcttttagtagattgtgaaataaaagaaactatgcctttggatcgaaaa
ccaggtagcacgttcaatcttgccggtcccatagtagttggtcttcaagccacacccgat
cagtattatgaaggcgacatagaactactgcaatttgcaaataaaccagatgttgcatat
gagatgtgtattaacatcgcccctgattgtggatcaggtttcggcttcatacatcaagca
cccagtaacaatatatttacaacaggaagggaaccagtttttaaacctatagcttacgat
agaacaacgccaatagacgttgatcccaccacagatgatccaagacgttatgatatcggt
agaaaccgatttccagacctgaatcaaactgacaataatctttgggctatggctggtaga
gatctcacaaccgtcagaggaacttggcaaattacagactcttataacgcagtcactgaa
caacatatgcctttgactgattctgatgaaaacagcattttcggaagatttacagatgat
caagaatatttaaccgctttaactggtgctccagattacactgtcccgattgccattggt
ttctcatcacctggattacaagaaactaccacacccagggacgtaccgcgcgttacgcga
gaggatgttgatccggaagtggagctcgtaaccacagaggcgtcgtacacccctatcaca
accactgaggatacagattggctcacgcatccgcccgacgtaggcgagggtaactcgtcg
tcatacgattcgtcagagacttattatgactatgggacttcaagtacatatttgggccct
agagggtaccctgggccgccgggcccacaaggtccccgaggacctaaaggagatccagga
aaacccggattagagggacaacaaggatttgcaggccccccaggacatgtttttgtcgta
cctttgcaacaatcaggaaatgacaaaggacctgatgcacaatccgaagcgctacgtcaa
atgttatcacaacatatgaatgctatgcgcggtgcggaaggaccaatgggtttaacgggt
ccaccaggacctgagggagagaccggtgcagaaggtcctaaaggcgaacaaggggaacaa
ggagaaccgggcccaccaggaccgagaggtctacaaggccttccaggtcgggttgggcgc
cgtggacacgcaggtagagatggtgaaagaggttctactggcgtctctggtcctaaagga
gaacaaggttatccgggcgtaccaggcatgcccggagataagggggagaggggtattccg
ggattacaaggggaagtcggttcccctggacaagacggtcctccaggggacgatggacca
ccgggcccacctggacaccctggagaactgggacccagaggttttatgggacctagagga
ttcccaggattaattggatacccaggaataccgggcactgaaggtccacaaggaacaaaa
ggagcaactggccagcctggcccatcgggcccacagggccaacccggggcaatggggccg
acaggcgctccaggaccccaaggacccattggcgctccgggaatacagggtcctcaagga
aaaccagggatttctgggctgccagggcctgaaggagtgcccggtactccaggtaaccct
ggacaacaaggttccccaggtgaagtaggaccacaggggccgcagggaatgttaggcttt
cctggcatgagaggtttaaaaggagacgaaggaccgcgaggtctgcctggtgacaaagga
gacaaaggaataagaggcattgaaggagaaaagggtgaaatgggaccaaaaggtgaacga
ggattgcctggtgaaccagggccttcaggaaatgaagggcctgaaggacaaaagggtgct
gaaggtccacgcggggaaactggaacttccggtcccacaggggaaaaaggagctatcggg
ccaccaggtcttcaagggtatcctggtagtcagggtgaaaagggagacaagggtgcttcg
ggtagacgaggccgaaggggcaataagggaataatgggactagtaggaacaccaggagac
cgaggcgaaatgggaccccgagggtatagaggacctcgcggtcggcgtggttcagatgga
gcgccaggacccaaaggtgatacagggcaaccaggtccaccagggtctataggagagaga
ggtcctcaaggagtcgaaggtgttcgaggttatccaggggctattgggccccctggtgca
gatgggaaacccggcttacccggacctgtaggagaacgtggccctacgggggaacaaggt
gctattgggccagttggtcctgcgggagctgttggaccacaaggacctaacggtgaacca
ggtccacctggaccaccaggtgcttcgggtattccaggaacaccaggtgatataggcgct
ccaggtgaagttggaaaagaagggccacctggcccaccagggcctgaaggcaaaccggga
cccgttggatcatctggcccgcaaggacatcatggagaaccaggattaccgggagctgca
ggaactccgggaagtaaaggtgatatgggtccaacgggtcctcctggtttaagaggtgat
aaaggagaaccaggtgatcctggtcgtgaaggaccgcaaggacttcaaggccgcgagggc
cctccaggtcctccaggtcccggaggtcaaaaaggagaaattggtgaacctggcgcagtt
ggccccattggacgcgatggcttaaccggacctagaggtttacctggcgcacctggacca
gtcggtccacctggagaagatggagacaaaggagaagctggaccacctggtgagaaaggt
tttaaaggagcgtcgggagaacccggaccacctggcgcaccaggtgttcaagggctgcga
ggcgaaattggcccagttggtttaccaggagaaaaaggccctcccggcgatagtggtact
cctggacctccgggcacagatggagttcgaggcccaccgggacctacagggcccgctgga
gcacagggaatgaaagggcaacaaggattaaaaggagatatgggagacactggaccgatt
gggccggtagggccagctggcccagcaggtccaccgggacacagaggatccaaaggcgtt
caaggagaaccgggacccagaggagcagagggacaacatggagacattggcagccctgga
ataccaggattaccggggccacaggggcctgaaggaaaacttggacctaggggacccact
ggtcccaaaggagatgatggagcttctggattacaaggagaaccagggccaaaaggtctt
cctggaccggaaggtccaaaaggcgaagctggtcctgcaggtttgccaggagaacgagga
gaacctggaccccaaggaataaaaggcgagcctggagtagatggtccggaaggaagtaca
ggacaaccagggccatcaggacctgtcggtttaccaggaaaaccaggcgaatctgggatg
cctggcagcccaggtacagaagggcctgcaggccttcaaggcagccctggcctaccagga
gaaaagggagacatgggtccaaagggagcacctggtgaaatgggaccaactggccccgct
gggcaaccgggtcctgaaggccaacgtggaattcgaggaccaccaggaaccagcggcgag
acaggggctcctggagtgatgggaccagcagggcccccaggcaaagctggccctattggc
tcacaaggcattagaggcgaaaagggcaacaggggacctaaagggcacattggcgataca
ggaccaatgggaataaagggtgaccagggcgaagttggtaagccaggtccaccagggcca
gcaggacctatgggccctaaaggcgatttgggtcccgcagggggtctagggcctaaagga
gatgcgggaccaatcggcctgcttggcccagaaggcccgataggaaataaaggtgaccca
ggacccgaaggtagaccaggcctaccaggtccaccaggcgctcctgggccaccaggacct
cctgcacctccacctcagataccacaagaactgtactcttcctatagacgacgccgtagc
atagatgcatcgtcctctatggaatctgcaactgaagacatctttgatgaagacgaagag
gtaggttggatgaaagacatcatggcaggagtgatagctgcacaaagcgcattagaagcg
gccaagcgaccacgcggcagtcggaataatcccgcgctctcatgccgtgacttgcgcact
tcacaccctaatatgacagatggtcattattggattgatgcacgcggaggaagtggcatc
gggcgtccaataagagtgtactgcaaaaactatagcacctgcttatactcggacgtcacg
cagcccggcgtatacaacaacgataacactatgcataggttctcccagatgaacaatgga
ttccgtataacatacgaagcagaatcggctggatccatacagttacgatttttaagacta
ctttcaaacggcgccaggcaaaattttacctactcctgtatcaacacaaaattaccacaa
agatccgatattcctgccgatttaattagagagaggaacctaaggatatttggttttagt
tcaacagaattcagagaaccacaaatagtcaaagatgactgcaaggaaggatcaggggag
ataacattagagatcaaaacctctcggaccgacagactgcccataacggactttcaacca
ttatcctttgtggacgcagaacatcagttcacattcacagtgggaccagtgtgtttcaca
taa
DBGET
integrated database retrieval system
