Manduca sexta (tobacco hornworm): 115455557
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Entry
115455557 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC115455557
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115455557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msex03021
]
115455557
03019 Messenger RNA biogenesis [BR:
msex03019
]
115455557
Transcription machinery [BR:
msex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115455557
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115455557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
zf_UBZ
NIF
Motif
Other DBs
NCBI-GeneID:
115455557
NCBI-ProteinID:
XP_037303593
LinkDB
All DBs
Position
7:2117572..2142954
Genome browser
AA seq
1748 aa
AA seq
DB search
MSKEIAEEYASSLADLTVNSKPLINMLTILAEENIDHAGVIVETVEKHLEKVHPEIKLPV
LYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVDEKIRSQMFKLRETWHDVFPATKLYQ
LDVKVNLIDPAWPIQAQPHQSNIHVNPNFLKKNVPTTSTVPPVMSEEERSIIAKKEQELL
MLQKKKIEMELEQTRKQLELAEKNAKKIGTLTPTPGLVPSPMPVAMVNPVVAPAHVPQDP
VVPIKQRLGPPVNKSGARIAPVSAALAAARRDSAPRAPARAPAPHAAPPAPPPPRPHRPP
XAPLVPVLPIAPHVFDIKPLERVTKRKNVITIDVRPDAADRRLNARDPRRRDDKRDQRRD
RPRGKFARRRDDRKPDAPAPPADRNSGVDADAERNFDALIDKMQVPDPKKINKLPPIPKI
PRDDPLRDADSPTPKRRKEGVRDKKKRRDEAECKDATINNQSSPEKKLKGKDGRKRKEAR
VDEEPEETSQEEVVVFKELKNYHKGRYMRRNKEKSESPETVPEAADADKPAAESEPASVA
DAVVENKDVDLRVLQQVVETPATISQKRPSTEALEGKAKKNKIDKFDILFGNEDVDLRQL
PQVDEVATAPPPPSMTDSPERKEDKDVDMHSPRNSPKQKDWNEVKEKDKSDARKSMSKLD
LVRAKLAEATKGKDRLGRPLLFSKSPSKSFLTYAPILFTGIEKERRRTLSSEDTDLRNEN
GEEFDAEDHKKTISIIMSQAKEQFTDGQLDKNQYNTLMYQVLQLNEKLKLKEAKQRESLE
QSKRKLKAHIDEENHKIPSPRSSPNERNNFGDIDERINPAVFMDTPPDSQGYLQDSDMRI
NSMISMDGPDGHKSKGLLPLPPMMPMFAGYQPMVRVRGQPRPRTEEYVPRRFRGPAPPFF
RAKFDKRMPRPGFDPRLPLPLPTPIMGMCQSECPLQPYVRNESPPPLGAPGFVIPPTDYK
ILDYIHQDPVKTIQIDNVPREIRFYGDTAIIMMDWDDPREIKFFPGCRRITFDNKDSVVL
TFNEDYKQIEIDDQVFDIKFGAPTRELFINGRWFECFFGGQPLGVLIDGKPRLVHLEGPV
PQVHIGKTKRTDLVAGKINLIVNATQMCPVYLDAKVQKFTINGQFFTIRFVDSLKTVLIN
EQPFKVEFGDLPKPLTIGNEKYFIRFSALPRNIKPGLVQIANMEGASVPIAKPISQPPQE
AKEPESTSPEEEEARPAKTPSPDITNENQGLDMLASVMPSSIAPASGSEYSLAEPLFVKT
DNIPGLETPVDKNPPSTTVPILGNINVNDLFAKLLATGIVQMPAEKEKEEKPDLKAEEKV
KPKDDKSVIHKVDMLKPETLRVKQPGIVSKLYGGMQCSGCGTRFPPEHTVRYSQHLDWHF
RQNRRERDSARRAHSRHWHYDLSDWLQYEELEELDEREKNWFESGMAEGGAEESAAGAGG
AGAAALAGAAAGACADAPSVAAGAPAPHHCALCGDAFHQFYNEDKEEWHLRNSVRHNGDN
YHPLCLDDYKASLTKEEPKQEDEMAVVDKIEEEEAIEIKDVDETLDQSDNESVVEVIEQM
EPEVSEPVEIDEGDEDDVVLKAEPIEQVVVEDDADTDDETAASRAERDRRAEIDFSKVRI
KQEPIDPDDEPIITTTSQENIIQPSVDVPHTTVLSSIDGNVQFDSAPAPATTLPLGGIRI
NISKSIPSFIANNDDKSLEDISADDEPLPPGEEPELEYKLKPALEGIHFSKQPPVQRGNE
LSGLCSIM
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaaatcgcggaggagtatgcgtcaagcttggcggaccttaccgtcaacagc
aagcctttgataaatatgttgaccatactcgcggaagagaacatcgaccacgccggggtt
atcgttgaaacagtggagaagcatttggagaaggtgcacccggagatcaagctgccggta
ctgtatttagttgactcgattatcaagaatgtcggaggcgcttacacacagaaattctca
cagagcattgtcaacatgtttacacggactttcaagcaggtggacgagaaaatacgttct
caaatgttcaagctgcgcgagacgtggcacgacgtgttcccggcgacgaagctgtaccag
ctggatgtgaaggtgaatctgatcgacccagcgtggccgatacaagcgcagccgcaccag
tcaaacatccatgtaaatccaaattttctgaaaaagaacgtgcccacgacgagcactgtg
ccgccagtcatgtctgaggaggagcgtagcataattgccaagaaagaacaagagttactg
atgttacagaaaaagaagatagaaatggaacttgagcagacgcggaaacagctcgagttg
gcagagaagaatgctaaaaagataggcacgttgacgcccacgcctgggctagtgccgtcc
cccatgccagtggcgatggtgaatccggtggtggcgcctgcgcatgtcccgcaggacccc
gtcgtacccatcaaacagaggctgggcccgccggtgaacaagtcaggcgcccgcatcgcg
cccgtcagcgccgcgctcgccgccgcgcgccgcgactccgcgcctcgcgcgccagcacgc
gcccccgcgccgcacgccgccccgcccgcgcccccgcccccgcgcccgcaccgcccgccc
nccgcgccgctcgtgcccgtgctgcccatcgcgccgcacgtgttcgacatcaagccgctc
gagcgcgtcaccaagcgcaagaacgtcatcaccatcgacgtgcgccccgacgccgccgac
cgacgcctcaacgcgcgggacccgcgccgccgcgacgacaagcgcgaccagcgacgcgac
cgcccgcgcggcaagttcgcgcggcgacgcgacgaccgcaagcccgacgcacctgcgccg
cccgccgaccgcaactctggtgtcgacgcggacgccgagcgcaattttgatgcgctcatt
gataagatgcaagtgcccgatccgaaaaaaatcaataaactaccgccgatccccaaaatc
cctcgggacgatcccctcagagacgccgactcgccgacaccgaaacgacggaaagagggc
gtgcgggacaaaaagaaacgcagagacgaagcggagtgcaaagacgccacaatcaacaat
caatcgtcgcccgagaaaaaactaaagggcaaggatgggcgcaaacgcaaagaggcgaga
gtcgacgaggagccggaggagacgtcgcaggaggaggtggtcgtgttcaaggaactcaaa
aactaccacaaggggcgctacatgcgccgcaataaggagaagtccgagagccccgagacg
gtgcccgaggcggcggacgcggacaaaccggccgcagagagcgagcccgcaagcgttgcg
gacgctgtggtggagaataaggatgtggacctcagggttctgcagcaggtggtggagacg
ccggcaaccatcagccagaaacgaccctctactgaggccctggaggggaaagctaagaag
aacaagatagacaagtttgatattttatttggaaacgaggacgtcgatcttcgtcaactg
cctcaagtggatgaagtggccaccgctccaccacctccctccatgaccgactcgcctgag
aggaaagaagataaggacgttgacatgcactctcctaggaactcgcccaagcagaaagac
tggaacgaagtgaaggagaaagacaagtcagacgctaggaagtccatgtcgaagctggac
ttggtgcgggcgaagttggctgaggcgacgaagggcaaagacagactcggcaggccactg
ctgttcagtaagtcaccaagtaaatcttttttaacatatgcacctattttatttacaggt
attgagaaagaaagacgccgcacacttagctcggaagacacagacctcaggaacgaaaac
ggcgaggagttcgacgcggaagaccacaagaagacaatatccattatcatgtcacaggcc
aaggagcagttcactgacggtcaactcgacaagaaccagtacaatactctaatgtaccaa
gtgttgcaactgaatgagaagctcaaattgaaggaggccaaacagagggagtcccttgaa
cagtccaagagaaaactcaaggcacatatagacgaagagaatcacaagatcccatcgccc
aggtcctcgccgaacgagaggaataacttcggcgatattgacgagagaatcaatccagct
gtgtttatggacacaccaccagacagccaagggtacctccaagactccgacatgagaatt
aattctatgatttcaatggatggtccagacgggcataagtcgaagggtttattaccactg
ccccccatgatgcccatgtttgccgggtaccaacctatggtgcgagttagaggtcagccc
aggccaagaacggaggaatatgtaccaagaaggttccggggccccgcgccaccgttcttc
agagcgaagtttgacaaaagaatgccgcggcccgggttcgacccgcggttgccgcttccc
ttgccgactcctataatgggtatgtgccagagtgagtgtccgctgcagccgtacgtgagg
aacgagtcgccgccaccactcggcgcacctggttttgttatcccgccgactgattacaaa
atcctagattacattcaccaagaccccgttaagacgatacaaattgacaatgtgccgcgt
gaaatcaggttttatggcgacaccgctataataatgatggactgggacgaccctagagag
attaaatttttccccggctgcaggcggatcacgttcgacaacaaggactctgtagtgctg
acgttcaacgaggattacaaacagatcgagatcgatgatcaagtgttcgacatcaagttc
ggtgcgccgacgagagagttgttcatcaacggcagatggttcgagtgtttcttcggcgga
cagccgctgggcgtgctgatcgacggcaagccgcggctcgtgcacctcgagggccccgtg
ccgcaggtccacatcggcaagaccaagcgcaccgacctggtcgccggcaaaataaacctc
atcgtcaacgccacgcaaatgtgccctgtatacttagatgctaaagtacaaaagtttaca
ataaacggacagttttttacaattagatttgttgattcattgaaaacagttttaataaat
gaacaaccgttcaaggttgaatttggtgacttacctaaacctctaactattggaaacgag
aagtatttcataaggttctcggcgctgcctaggaacataaagcctgggttggtgcagata
gccaacatggagggtgcatcggtgcctatcgcgaagccgatcagccagccgcctcaggag
gcaaaggaaccggaatcgacgagtcccgaggaagaagaggcgcgacccgccaagaccccc
agtcccgatatcactaatgagaaccaaggtttagacatgttagccagcgtgatgccatct
tcgatagcgccggcgtcaggctccgagtacagtctggcagaaccactgtttgtcaagacc
gataacataccaggcttggagacgcccgtcgacaagaatccgcctagtacaaccgtgccg
atacttggtaacattaacgtgaatgatctatttgccaagttgctggcgactggcatcgtg
cagatgccagctgagaaggagaaagaggagaagccagatctcaaggcagaagagaaagta
aagccgaaggatgacaagagtgttatacacaaggttgatatgttgaagcctgagactttg
agagttaagcagccgggcatagtgagcaagctgtacggcggcatgcagtgctcgggctgc
ggcacgcgcttcccgcccgagcacaccgtgcgctactcgcagcacctcgactggcacttc
cgccagaaccgccgcgagcgggactccgcgcgccgcgcccacagccgccactggcactac
gacctctccgactggctgcagtacgaggagctcgaggagctggacgagagagaaaagaat
tggttcgagagcggcatggcggagggcggcgcggaggagagcgcggcgggcgcgggcggc
gcgggcgcggcggcgctggcgggcgcggcggccggcgcgtgcgcggacgcacccagcgtg
gcggccggcgcgcccgcgccgcaccactgcgcgctctgcggcgacgccttccaccagttc
tacaacgaggacaaggaggagtggcatctgcgcaactccgtccgccacaacggcgacaac
taccatccgctctgtctcgacgactacaaggcttcactaacaaaagaagagccgaaacaa
gaggatgaaatggcagtagttgataaaatagaggaggaggaagcgatcgagatcaaggat
gtggacgagacgctcgaccagtctgacaacgagtccgttgtggaagtaattgagcagatg
gaaccggaagtgtcggagccggtggagattgacgagggcgatgaagacgacgtggtgctg
aaggcggagccgatagaacaagtggtggtggaagacgacgccgacaccgacgacgagacc
gccgcctcccgcgccgagcgcgaccggcgcgcagagatagacttttccaaagtcaggatc
aagcaggaacccatcgatcccgatgacgagccaataataacaacaacatcacaggaaaat
ataattcagccgagcgttgacgtgccacataccacggttctctcgtccatcgacggtaac
gttcaattcgactctgcgcccgcgccggccaccactctccccctcggcgggatacggata
aacatctccaaatccatcccgtccttcattgccaataatgatgacaaaagcctcgaagat
attagcgcggatgacgaaccgctcccaccaggagaagaacccgagttggaatataaacta
aaacctgcgttagaaggaatacatttcagcaagcagccgccggtgcaacgaggcaatgag
ttatcagggttgtgttctattatgtag
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integrated database retrieval system
