Manduca sexta (tobacco hornworm): 115455678
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Entry
115455678 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03013
Nucleocytoplasmic transport
msex03015
mRNA surveillance pathway
msex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115455678
09122 Translation
03013 Nucleocytoplasmic transport
115455678
03015 mRNA surveillance pathway
115455678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115455678
03041 Spliceosome [BR:
msex03041
]
115455678
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115455678
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115455678
Spliceosome [BR:
msex03041
]
Complex C
Other components
EJC/TREX
115455678
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115455678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115455678
NCBI-ProteinID:
XP_030040201
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All DBs
Position
9:complement(2726113..2727724)
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AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMSGVKVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRSMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERXNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgatgatctcctcgactacgaagatgaagagcaagcagatcaacagaca
gccgatggggcgacagaagcggcgccaaagaaagaggttaagggctcttacgtatcaata
cacagttctggcttcagagatttcctactaaaaccagaaatattacgagcgattgtcgat
tgcggttttgagcacccttcagaagtacagcatgagtgtataccacaagcagtattgggt
atggacatcctgtgccaagccaagtctggtatgggtaagacggcggtgtttgtgttggcg
acgctacagcagctggaaccttcggagaaccatgtctacgtgctcgtcatgtgccacaca
agagagctggcttttcaaatcagcaaggaatacgagcgattctccaaatacatgtcagga
gtgaaagtgtcggtgtttttcggcggaatgcccatacagaaagacgaggaggtcctcaag
acggcgtgcccacacatcgtggttggcactccgggcagaattctggcattagtcaacagt
aagaagctgaacctgaagcatttaaagcacttcatactggacgagtgcgacaagatgctg
gaatcgctggacatgcggcgtgacgtccaggagatatttaggaacacaccacacggcaag
caggtgatgatgttctccgccacgctcagcaaggagatcagacccgtctgcaaaaagttc
atgcaggatcccatggaggtttacgttgacgacgaggccaagctgacgctgcatggcttg
cagcaacattatgtgaaactcaaagaaaatgagaaaaacaagaagctgtttgaacttctt
gatgtgctggagtttaaccaagtagtaatatttgttaagtctgtacaacgctgcatagct
ttagcacaactattgactgaccagaacttccctgcaataggaatacatagatctatgact
caggacgaacgtctgtctcgctaccagcagttcaaggacttccagaagaggatattggtg
gctacaaacttgtttggccgaggcatggacattgagcggntgaacatcgttttcaactat
gacatgcctgaagattctgacacttacctgcatcgcgtcgcccgtgccggtcgcttcggt
actaaaggtctggccataacaatggtgtcggacgaaaatgacgccaaaatcctgaacgag
gtccaagaccgttttgatgtcaacatcacggagctcccagaagagattgaattgtctaca
tacattgaaggccgatag
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