Manduca sexta (tobacco hornworm): 115455799
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Entry
115455799 CDS
T07401
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115455799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115455799
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115455799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_Gbeta
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_DCAF4
Tricorn_2nd
Beta-prop_WDR11_2nd
Beta-prop_WDR41
WD_LRWD1
Beta-prop_ACSF4
Beta-prop_IP5PC_F
Frtz
Motif
Other DBs
NCBI-GeneID:
115455799
NCBI-ProteinID:
XP_030040382
LinkDB
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Position
10:complement(6229401..6232442)
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AA seq
861 aa
AA seq
DB search
MDYGHPQPNLSMPPPGMGMGPPMGPPMGPPGRNNMRHNFRPFNYQMRFPPQGPLNMTQDD
FDGKRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQPDAMYTPDLLPPPSYAENP
INAVTTRFVKTATNKMRCPIFAVAWTPEGRRLITGASSGEFTLWNGLTFNFETILQAHDS
PVRSMVWSHGEGWMVTGDHSGFIKYWQSNMNNVKMYQAHKEAVRGISFSPSDSKIVTCSD
DGTLRIFDFYRCQEERILRGHGADVKCVQWHPTKALIVSGSKDNQQPIKLWDPKSGTALS
TLHAHKSTVMDLKWNDNGNWLITASRDHLLKLFDIRKLGSELQIFRGHKKEASSVVWHPT
HEGLFCSGGSDGAILFWNVGTDKEVGCIEGAHESIVWTMAWHPLGHILCSGSNDHTSKFW
TRNRPGDLMRDKYNLNTLPPGVQDDNDLEEPAVIPGMGPEDKVEIFSSDTDKVIPGLDLD
TTFVPMEFEKKVKKVPYSKPIPRNFQAQWNHGPTADDAASEALTQALVESVPGAIPLQQI
TPSAIFIYGKLIIVEPGSKLEKSISEGPMALKKYIATGEIEELHDVMPHLEDDADEDNFQ
PFEYPDQEENPGENADEDMEDDSYNDYEHEQDYYDNEMNATEQSNQDQDEDNYNNGSDRS
NMSSMNNMPPMNNMMRPPGPMGSMRPPMVPPMRPLLIPPPHMTGMPPPIGTMPPMTTMPP
PLGTMPPINAMPPMVNMPPMGNMSLRPPFSDNGYNKQRFDSNYEQSFSPNNEEYNEDDSY
EQNYDDENNYNEEDNGNEGFSRNQRWDGGYRGRSRGRGRGMNGHGGRGNWRGNGGMRGSP
RNRRSSGGNRSYRRGGKPISN
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggattacggccatcctcaaccgaatctgtcaatgcctccacccggcatgggcatgggt
cctcctatgggcccgcctatgggtccacccgggcgcaacaacatgcgccataactttagg
cctttcaactaccagatgcggtttccacctcagggtccccttaatatgactcaagacgat
ttcgatggtaaacgcttacgtaaatctgttatgcgtaaaactgtagactataatgctgct
attatcaaagcactagaatgtcgcgtttggcaacgggactggcgggaccgacacgcgctg
cagcccgacgctatgtatactcctgatctcttaccgccgccctcttacgctgaaaacccc
ataaatgccgtgacaacgcgtttcgttaaaactgcaacaaataaaatgaggtgtcccata
tttgctgtagcttggacaccggaaggtcgaagattaataactggggcttcttcgggcgaa
tttactttgtggaatggtttaacatttaattttgaaactatccttcaggctcatgattct
ccagttaggtccatggtatggtcacacggagaaggatggatggtaacaggtgatcactca
gggtttatcaaatattggcaaagcaatatgaataatgttaagatgtatcaagctcataag
gaagcagttagaggaataagtttcagtcctagtgattccaaaatagtaacatgttccgat
gatgggacactgcgtatcttcgacttctatagatgtcaagaggaaaggatattgagggga
cacggggctgatgtgaagtgtgttcagtggcacccgactaaagctctcattgtgtctgga
agcaaagataaccagcagcctattaaactatgggatccaaaatcaggaacagctttatca
accttgcatgctcataaatctacagttatggatctcaaatggaatgataatggaaattgg
ttgataacggcttctcgtgatcacttactcaaattgtttgacattcggaaattaggatcg
gaattacaaatatttagaggtcacaagaaggaagcatctagcgtagtatggcatcccaca
catgaaggattattttgttcaggaggttcagatggagctattttattctggaatgttggt
actgataaggaagttggatgcatagaaggagctcatgaatcaattgtttggacaatggct
tggcacccattgggccatattttgtgctcaggatctaatgatcatacatcaaagttttgg
acccgcaaccgccctggtgatctcatgagggacaaatataatttgaatacattacctcca
ggtgtgcaggatgataatgatttagaagaaccagcagtcatacctggaatgggtcctgaa
gataaagttgaaatattttcttcagacacagacaaagttatacctggtttggatctggac
acaacatttgttccaatggaatttgagaaaaaggtaaagaaagtaccctatagtaagccc
attccaaggaatttccaagctcaatggaaccatggacctacggctgatgatgctgcatca
gaagcgttgacacaggctttagtggaatctgtcccaggagcaatacctttgcaacaaatt
accccatcagccatatttatttatggaaaactaattatagtagagccaggatcaaaactt
gaaaaatcaatatctgaagggcctatggctctcaaaaagtatatagcaacaggagagata
gaggagctacatgatgtaatgccgcatttggaagatgatgcagatgaggacaactttcaa
ccctttgaatatcctgatcaggaagaaaatccaggtgaaaatgcggatgaagacatggaa
gatgatagttacaatgattatgaacatgaacaagattattatgacaatgaaatgaatgcc
acagagcagagcaatcaagatcaggatgaagataattataataatggatcagataggagc
aatatgagttcaatgaataatatgccaccaatgaacaatatgatgaggccaccaggtcca
atgggatcaatgaggccaccgatggtaccccccatgcggcctttgctaattcccccacca
catatgacaggcatgcctcctcctattggaactatgccaccaatgacgactatgcccccg
cctttaggtactatgccccctataaatgctatgccgccaatggttaatatgccaccaatg
ggaaatatgtcactaagaccacctttctctgacaatggatataataaacaaaggtttgat
tctaattacgaacaatccttttctcctaacaatgaagaatataatgaagatgattcttac
gaacaaaattacgatgacgaaaataactacaatgaagaagacaatggtaatgaaggtttt
tcacgcaatcagagatgggacggcggctatagaggtagaagtagaggcaggggtcgcggc
atgaatggtcatggtggacgaggtaactggagaggcaatggtggcatgcgaggatctcca
agaaatcgcagaagttcaggcggtaatagatcttacagaagaggcggcaaacctatttcc
aattag
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integrated database retrieval system
