Manduca sexta (tobacco hornworm): 115455854
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Entry
115455854 CDS
T07401
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115455854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115455854
03012 Translation factors [BR:
msex03012
]
115455854
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115455854
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115455854
Translation factors [BR:
msex03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115455854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_N
OB_NTP_bind
HA2_C
ResIII
nSTAND3
AAA_19
Cas3-like_C_2
NB-ARC
RsgA_GTPase
NACHT
ABC_tran
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
115455854
NCBI-ProteinID:
XP_030040474
LinkDB
All DBs
Position
10:5909391..5917868
Genome browser
AA seq
1064 aa
AA seq
DB search
MPPKRPYGRPPGLRGKDIGLYYKSRQLQKKNTENRYTINLKIPPNVVSSIQNNLASIKRI
ANELNIPIKPMKTLDLCETPGNETSPDAINSSQHDLKSTDMKPPETYTRASKKSKDEPTN
NSKSKQMPTSSYDFVPNNEKNRDSIATRIAKSVNRQSENFDSHNQRLGLGLKAFKYGYDD
IITGNFDEKLDECLARGNVSLKYDMDHSLAIYEDYKNMLSREGYKKLLKFREILPTYKKS
AKLLEVIKNNQVVVISGETGCGKSTQVPQIILDDAINNKIGSTVKILVTQPRRIAASSLA
KRVSEERGERMGNTVGFAVRLEKIDPRPVGSILFCTTGILLTELEVDQGLGSFSHIILDE
VHERDTHIDLALCMLKKVLSKRKDVRLILMSATIDAEKLSEYYDNCPMVHIEGLAYPVKD
IYLEEILQITNYELPIDVKNSQYQNPSKPWQKHVKKFKLEAANAIEKDVKYRAEISKWLE
SKRKSLPRHVYHSLQNPKIEDLNIDLVYEVVRHICIGEPGAILVFLPGIGDITKLLKKMS
ESKKFPPSAYEIYPLHSKLPSLEQHKIFERPLPHVRKIIVATNIAETSITVDDIVYVVDC
GKIKYNGFNIEENVTTLKTEWVSKANLRQRRGRAGRCQPGICYHLVSSYRAETLEELLKP
EIQRCDLLEAVLAVKRLRLGKAEEALNSMPAPPAASTIQSAVKHLQKCGALDEHETLTPL
GWHLARLPVHPSAGKLLVLGALFGCLDRAASVAAVWGFKDPFQLVIGKEKEVDEARRCFA
QGEPSDHIAVSEAIINWEMCSYKGRNNFAYDNFLSKSTLEMLTEMKKQLGENLKQMGFLN
SGNIKSQWENRNSENFSLFKAIVAASLYPNIATVKWLNINTYNRHKPIRIKVHTPEDGLI
EIHPSSVLGVVTGRNSTRENTLCVKPGANWLVYWLKQKSTKLYLFDVTLVYTLPLLFFGE
LKVTKDEESDDYFISISKIRVRCKKETTQLLFEVRSLLDQVLASKIMVSSQHCSSRNTRF
EEQVLNTVTELITAEDERAEYLGDDEDLSESEYSEDESERSWCK
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgccccctaaaagaccatacggccgtccacctggcctgagaggcaaagatataggactt
tattataaatcacgacaattgcaaaaaaagaacacagaaaatcgttatacgatcaatctt
aaaattccgcctaatgttgtatcatcaattcaaaataatttagcttcaattaaaagaatt
gcaaatgagctaaatatccccatcaagccaatgaaaacattagacttgtgtgaaacacct
ggcaatgagacatctccagatgcaataaattcttcacagcatgatttaaaaagtacggac
atgaaaccacctgaaacatatacaagagccagcaagaaaagtaaggatgagcctacaaat
aattcaaaaagcaaacaaatgccaacttcaagttatgattttgttccaaacaatgaaaag
aatagggacagtatagcaaccagaatagctaaaagtgtgaatagacaatctgagaatttt
gattcacataaccaaagactaggtttagggcttaaagcctttaaatatgggtatgacgac
ataataactggcaattttgatgaaaaactagatgagtgtttagccagaggtaatgttagt
ttaaaatatgatatggatcatagcctagctatatatgaagactacaagaacatgttgtcc
agagaagggtacaagaaactgttgaaatttagagaaatattgccaacatataaaaagtct
gcaaaattgttggaggtaataaaaaacaaccaagttgttgtgataagcggtgagactgga
tgtggaaagtctacacaggtcccacagatcatcctagatgatgcaattaacaataaaata
ggttctacagtcaagattttggtcactcagccaaggcgtatagcggcctcttcattggct
aagagagtgtcagaggaaaggggtgaacgaatgggcaatactgttggatttgcagtgaga
ttagaaaaaatagatccaaggcctgttggcagtatattgttttgtacaacaggtatacta
ttaactgagctagaagtggaccaaggcttgggtagtttcagccacataatactggatgaa
gtgcatgaaagagacacacatatagacttggccttgtgcatgttaaaaaaggtcttaagc
aaacgtaaagatgtacggctaatactaatgagtgccactatagatgcggaaaaactgtca
gaatactatgacaattgccctatggtacacattgaaggcttggcatatccagtgaaagat
atttacctggaagaaattctgcaaattactaattatgaactaccgattgatgtaaaaaat
tcccagtatcaaaatccttctaagccctggcaaaaacatgtgaagaaatttaaactggaa
gctgcaaatgcgatagaaaaagatgtcaaatatagagccgaaattagtaaatggcttgaa
tcaaagaggaaaagtctgccacgacatgtatatcattcattgcaaaacccgaaaattgaa
gaccttaatattgacttagtgtatgaagtggtgagacacatttgtataggcgaaccgggg
gcaatccttgtgtttttacctggaatcggcgatatcacaaaactgctaaaaaaaatgagt
gaaagtaaaaaattcccaccttcagcatacgaaatatatcctttgcactcaaagttacca
tctcttgaacaacataagatatttgagaggcccctaccacacgtaagaaagattattgta
gctacaaatatagcggaaacttcaataactgttgatgatattgtttatgtggttgactgt
ggcaagataaagtacaatggtttcaatattgaagaaaatgtgactacattgaagacggaa
tgggtgtcgaaagcgaacttacggcaaagacggggtagagccggtcgttgccaaccaggc
atctgctaccatttagtgtcatcatatcgcgctgaaactctcgaagaactattaaagcca
gaaatacaaagatgcgacctgttagaggcggttctggctgtaaagagattaaggctgggc
aaggcagaggaggccttaaattcgatgccagcaccaccagcagcctcaaccatccagtct
gcggtgaaacatttgcagaaatgtggagcgttagacgagcacgagactctaaccccgctg
gggtggcatttagctcgtctacccgtacacccgtctgctggaaagctgttagtactcggc
gcgttgtttggatgtctggaccgcgccgccagcgtggccgctgtgtggggatttaaagac
cccttccagcttgtgatcggtaaagaaaaggaagtggatgaagcacggcgttgtttcgca
cagggcgaaccaagcgaccacatagctgtttctgaagcgatcattaattgggaaatgtgc
agctataaaggaagaaacaacttcgcctacgataatttcctatccaaaagtacattggaa
atgttgacagaaatgaaaaaacaattaggagaaaatctcaagcaaatgggttttctaaat
tcggggaatattaaatcgcagtgggagaaccgtaattccgaaaactttagtctgtttaaa
gcaattgttgcagcctcattgtatcctaacattgccacagtcaaatggctcaacataaac
acatataacagacacaaaccgattcgtataaaggtccatactcctgaagatggattgatc
gagatacaccctagtagtgtacttggcgtcgttacgggtagaaatagtacgagagagaac
acgctatgcgtaaagccgggtgcgaactggcttgtttactggttaaaacagaagtcgacg
aagctctacctctttgatgtaactctggtatatacactgcctttattgttcttcggagaa
cttaaggtgacaaaagatgaagaatctgacgattatttcatatcaatatcaaaaataaga
gtgcgctgtaagaaggaaacaacgcagctactcttcgaggtgaggtcactcttggatcaa
gtccttgcttcgaagatcatggtgtctagtcaacattgttcatccagaaataccaggttt
gaagaacaggttttaaataccgttacggaattaataacggctgaagacgaacgcgcagaa
tacctgggtgacgacgaagatctatctgaatcagagtattcagaagacgaatcagaaaga
tcgtggtgtaaataa
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