Manduca sexta (tobacco hornworm): 115456207
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Entry
115456207 CDS
T07401
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115456207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115456207
Enzymes [BR:
msex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
115456207
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115456207
mRNA degradation factors
3'-5' decay
Pan complex
115456207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
UCH
WD40_CDC20-Fz
Beta-prop_EML_2
PEP5_VPS11_N
WD40_Prp19
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
115456207
NCBI-ProteinID:
XP_030041033
LinkDB
All DBs
Position
14:4080004..4103686
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AA seq
983 aa
AA seq
DB search
MEYHYSDLCIPTDHLLSGQYTPDFAPQYMVPSQEAEYEVRSSVLVDGGDRFGVSAVVFDK
YEELVWMGNQGGHVTSYYGPGMQKYTSFQVHESDEVRDIITVEKGIYVLTKTVLRHQIRR
GLPRHTYRSNNMTDMQCLFQLSSSKLLMGGHQDKLINLDLNKMTETVIPIREEGCAVLRS
GGGSLVGCGSASGVVALRDIRTPENAEHTFRAHTACLSDLDMQGDLLITCGFTQSVGGAL
PEPHVVVWDVRCIRRGKGESAWSIRTTSPPLLLHFLPAFSGRAVAVAGDGHVALLHVNAP
DEKQSVFRVDTQSSQCSVMDVSSTSQALVFGDQSGHIHLFSPQHNHDPVFNNFSRATEFA
DPVVGIPSVSFNDTTFQFSSIPLPQLSSGTKWFNELPQEFFKKVYRKPKPIDPEVLRTMK
MQGPIGYAPNPKTFRRNQLPYVVEKLEDVQAARQNDNKYVMQPIPKHYQKMDIRYNKHGP
NDAEFENCNKTGMPGLEATLSNSYCNPMLQVLYYTPPVKATLLAHTCAKEFCLSCELGFL
FRMLDTSCGAPCAAANFLRAFRTVPEAAALGLILPDRGPAAGADLLPLIQSWNRFILHQI
HYEILETKKKEKELALLANSPPKTPRAKSRSAPQVNGQYSDEYQFTELEFLGPTEFECAD
GGDELWQGRNDGANDGEPVQNHDNHELNNQHASREESEISRLFAIGRHQLNRCLKCNKEE
GRESAALACALQYPGGAAGAEARWVFLELVRASLSARRSTPAWCDHCERFTPTTQRGRLV
RLPPILAINCGGVTVREKAFWSKGSTREMPEAKRGGSGKPCRYGLHCARPGCHFKHPDRP
NSSTSNASKTQDSHCVLPLQLVIRVQSDGDVLINEKNDHSTENSPSNRADTNKHKKKHVT
TQSEEEYTLSAAVVCVDDNPKNLVAYIQTSQKEGDPRWHLFNDLCIVPVTAEEVVHFGAW
WKSPCVLFYSSSRARVTNDEGKS
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggaatatcattattcggatctatgcatacccacggatcatctacttagtggccaatac
acgccggactttgccccccagtatatggtaccatcacaagaggctgagtatgaagtccgc
agcagtgtgcttgttgatggtggagacaggtttggagtgtccgcagttgtttttgataaa
tatgaggagcttgtttggatggggaatcaaggtggtcatgtgacatcatattatggtccc
ggaatgcaaaaatacacgtcatttcaagtacacgaatctgatgaagtcagagacattatc
accgtcgaaaaaggcatctatgtgctgaccaagacggtgttgaggcatcaaatacggaga
gggctcccaaggcacacttatagatccaataatatgaccgacatgcaatgccttttccaa
ttaagttcatcaaaattgttgatgggcgggcatcaagacaaacttattaatttagatttg
aataagatgaccgaaactgtgattccaatacgagaagaaggctgcgccgtactcaggagc
ggtggggggtcattagtcgggtgcggcagtgcgagtggtgtggtcgcgctgcgggacatc
cgaacccccgaaaacgccgagcacacattcagggcacacacggcatgcctctccgacctg
gacatgcaaggtgatctgctgatcacgtgcgggtttacgcagtcagtcggaggagctcta
ccagagccgcatgtagtggtgtgggacgtgagatgcatccgccgcggtaagggagaaagt
gcgtggtctatacgcaccacctcccctccacttctgctgcatttcctgccagcgttctct
ggcagggcggtggccgtcgccggtgatggacatgtggccctactccatgtcaacgcgcca
gatgagaagcagtctgtgtttcgggtggacacccagagttcgcagtgcagtgtgatggat
gtgtcttccactagtcaagcgttagtgttcggcgatcagtctgggcatattcaccttttc
tcaccgcagcacaaccatgatcctgtttttaacaatttttcaagagccaccgagttcgcg
gacccagtggtcggcataccaagcgttagttttaacgacacaacattccagttctcttcc
attccccttccacaactatcgtcaggcacgaagtggtttaacgagctaccacaggagttt
ttcaaaaaggtttacagaaaaccaaaacccatcgacccagaagtactaaggacgatgaaa
atgcaaggtcctataggttacgcacctaatcctaaaacttttaggagaaatcagttgccg
tacgttgttgagaaattagaagatgtgcaagcggcgagacagaacgacaataagtatgtg
atgcaaccgatcccaaagcattatcaaaagatggatataagatacaacaaacatggccca
aacgatgcagaatttgaaaactgcaacaagactggcatgcccgggctggaggctacgttg
tctaattcctattgtaatccaatgttacaggtattgtactacacgccgccagtgaaagca
acgttgttggcgcacacgtgtgcaaaagaattttgtcttagttgtgagctggggttcctg
ttccgcatgctggacacgtcgtgcggcgcgccgtgcgcggcggcgaacttcctgcgcgcg
ttccgcaccgtgcccgaggccgccgcgctcggcctcatcctgcccgaccgcgggcccgcc
gccggcgcagacctgttgccgctcatacagagttggaaccgcttcatcctccatcaaata
cactacgaaatattagaaacgaagaagaaagagaaagagttagcgttactagcgaacagt
ccgccgaaaactccgcgagctaagagcagaagtgcgccacaagtcaacgggcagtactcg
gacgaatatcagttcacggagctggagttcctcggaccgactgagtttgagtgcgctgat
gggggggatgaactgtggcaaggtcggaatgacggtgcgaatgacggcgaaccagttcag
aaccacgataaccacgagctgaacaaccagcacgcgagcagagaagagtccgagatatcg
cgcctgttcgctatcggcagacatcagctgaatagatgtctcaagtgtaataaagaggag
ggtcgcgagtcggcggcgctggcgtgcgcgctgcagtacccggggggcgcggcgggtgcg
gaggcgcgctgggtgttcttggagctggtgcgcgcgtcgctgtcggcgcggcgcagcacg
ccggcgtggtgcgaccactgcgagcggttcacgcccaccacgcagcgcggccggctcgtc
aggttaccgccgatattagcaatcaactgcggcggcgtcaccgtgcgggagaaggctttc
tggtctaaaggctcgacgagagagatgccagaagcgaagagaggcggtagtggtaagccg
tgtcggtacggtctacattgcgcgcggccagggtgtcattttaaacatccagacagaccg
aactcttcaacgtccaatgcttccaaaacacaagactcacattgcgttctgcctctgcag
ttggttatcagagtgcaatcggacggtgacgtcttaatcaatgagaagaatgatcactcg
acggaaaactcgccaagcaacagggctgatacgaacaaacataaaaagaaacacgtgacg
acacaatccgaggaggagtacacgttgtccgcggcggtggtgtgcgtggacgacaaccct
aagaacttagtcgcgtacatacaaacctcgcagaaggaaggcgatccgcggtggcacctg
ttcaatgatttgtgtatagtcccggtaacggccgaagaggtggtccacttcggcgcgtgg
tggaaatcgccatgcgttctgttctactcgtcgtcgagagctagggtaaccaacgacgag
ggcaagtcatag
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