Manduca sexta (tobacco hornworm): 119188535
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Entry
119188535 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119188535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
119188535
03041 Spliceosome [BR:
msex03041
]
119188535
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119188535
Spliceosome [BR:
msex03041
]
Complex B
Other components
Prp19-related factors
119188535
Complex C
119188535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
Mad3_BUB1_I
NRDE-2
ARM_TT21_C
DHR-2_Lobe_A
ARM_TT21
PPR
TPR_10
Motif
Other DBs
NCBI-GeneID:
119188535
NCBI-ProteinID:
XP_037297760
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Position
23:5273243..5276262
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AA seq
840 aa
AA seq
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MPLLDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKAAPKHEINMVYERALKEL
PGSFKLWYNYLKLRRSQIRGRCITDSCYEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITATRKAFDCALRALPITQHHRIWPLYLSFLKKHNIPETAVRVFRRYLKLCPEDTEEYI
DYLISIGKLDEAALKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEIAKKPNPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYENNEQIEDARLIFEKATQ
VNYAKVDDLASVWCEWAEMEIRHENYEQALKLMTRATVLPSRKVAYHDDSETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLEKCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERTTTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPDDK
AREMCIRFSEMETRLGEIDRXRAIYGHCSQMCDPRITAEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVQSKG
NIMFVRGETQGLKESSDKVVNPDEIDIDEESGNSEDEGEDEPVQKKDIPAAVFGGLMKED
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgcctttactagacggcaaagaaattgatatatttttcagtgaagaagatcttccctat
gaagaggaaatattacggaatcctttctctgtcaaacattggctcagatacatagagcac
aaaaaagcagcaccaaaacatgaaattaatatggtatatgaaagagctcttaaagaactg
ccaggttcatttaaattgtggtacaattatttaaaattgaggaggagtcaaattcgtgga
cgctgtataactgattcctgttatgaagatgttaacaattgctttgagcgctctctagtc
tttatgcacaaaatgcccaggatatggatggattactgtacctttttaacagatcaatgt
aaaataacagctacaaggaaagcatttgactgtgctttgagagcattgccaataacacaa
catcacagaatatggccactctatttgagtttcctaaagaaacataatatccctgaaaca
gcagttagagtttttcgtagatatcttaagttatgcccagaagacactgaagaatatatt
gactacttaatatccattggcaagcttgatgaagctgctcttaaattagcacagatagtc
aataatgaaaacttccaatctaaacatggaaaatctaatcatcagctttggaatgagctt
tgtgaacttatatctaaaaatcctgatcaaatacattctcttaatgtagatgctattatc
agaggtggacttagaaggtacaccgatcaattgggacacctatggaactctttggcagat
tattatgtaagaagtggtctttttgaaagagccagagacatttatgaagaagctattcaa
acagtaacaactgttagagattttacccaagtgtttgatgcatatgcacagtttgaagaa
cttagtcttagtaaaaaaatggaagaaattgcaaaaaaacctaatccaactgaagatgat
gatattgacttggaattacgcctagccagatttgaatatcttatggagaggaggttgcta
ttacttaattcagttctgctcagacagaatccgcataatgttgcagaatggcataaaaga
gtaaagttatatgaaggtaaaccacatgaaattattgatacttatacagaagctgtacaa
actgtagacccaaaattggctgtgggtaaattgtacacattgtgggttggatttgcaaaa
ttctatgaaaataatgaacagattgaagatgcaagattaatttttgaaaaggcaacacag
gtaaactatgcaaaagttgatgatttagcatcagtatggtgcgaatgggctgaaatggaa
attagacatgaaaattatgaacaggcacttaaacttatgactcgagcaactgtacttcct
agtagaaaggttgcttatcatgatgattctgaaacagtacaaatgagattatacaaatca
ttaaaagtatggtccatgtatgcagatttggaagaaagttttggtacttacaaatcttgc
aaagctgtttatgatcacataattgacttaaaaattgccacaccacaaataattataaac
tatggtctatttttggaagaacacaactactttgaagaagctttcagagcttatgaaaaa
ggtatagcattgtttaaatggcctaatgtgtatgatatttggaatacatatttaacaaaa
tttttaaagagatatggtggcacaaagcttgagagagctagagacttgtttgaacaatgt
cttgaaaaatgtcctcctgaatttgcaaaatcgatatttttgctctatgcaaaattagaa
gaggagcatgggttagctagacatgccatgtcagtatatgagcgtaccaccactgcagtc
cttccagaacaaatgttcgaaatgttcaacatctacattaaaaaggctgcagaaatctat
ggagtacctaaaactcgtcaaatctatgaaaaagcaattgaaactcttcctgatgacaaa
gcaagagaaatgtgtatacgcttctcagaaatggaaacacgtttaggtgaaatagaccgg
nccagagcaatatatggccactgtagtcaaatgtgtgatccaaggattacagcagagttt
tggaatacctggaaagaatttgaagttagacatgggaatgaagatacaatgagagaaatg
cttagaattaaaagaagtgtgcaagccacatataatactcaggttaatatgatgtctgca
caaatgttaagttcagctgcacaagcagctggtactatttcagatcttgctccaggcatg
aaagatggaatgagaatgttggaagcgaaggctgcagaaatggctgttcaaagcaaagga
aatattatgtttgttagaggggaaacacagggtctcaaagaaagctcagacaaagtggtc
aatcctgatgaaattgacattgatgaggaatcaggcaacagtgaagatgagggagaagat
gaacctgtgcaaaaaaaagatattccagctgcagtgttcggagggctgatgaaagaagat
taa
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