Manduca sexta (tobacco hornworm): 119189268
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Entry
119189268 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119189268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msex03041
]
119189268
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119189268
Spliceosome [BR:
msex03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119189268
Complex B
119189268
Complex C
U2 SnRNP specific factors
119189268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-GeneID:
119189268
NCBI-ProteinID:
XP_037294324
LinkDB
All DBs
Position
14:complement(11606694..11617386)
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AA seq
642 aa
AA seq
DB search
MAGLEQQAAKDLVASKENAASGKGDSGRGTRGDIDEMDDEESYYKYMEENPLNNGDDASD
VEVEYDEDGNPIAPPKNKIIDPLPPIDHSQIQYEPFEKNFYTPHEEIEKLTPQQVEELKK
NLGVKITGPDPPKPVSSFAHLGFDEQLMKAIRRSEYTQPTPVQAAGVPAALSGRDLIGIA
RTGSGKTCAFLWPLLIHIMDQKELAPGDGPIGLILAPTRELAQQIYMEAKRFGKVYNIRC
VCCYGGGSKWEQCKALEGGGAEIIVGTPGRVIDLIMQGXTNLQRVTYLVLDEADRMFDMG
FEAQVRSICAHVRPERQALLFSATFPRRVERLARDALRDPVRVAHGTGGATDLVTQHVRI
FYKPEEKWAWLLSNLVEFLSAGSVLIFVTKKLEAEQTAANLGVQQYDALLLHGDMEQADR
NKVITAFKRQENTILVATDVAARGLDIPHVRTVVNYTVARDIDTHTHRVGRTGRAGVRGV
AHTLLAADKDRDFAGHLVRHLEAAQQEVPEELMHLAMQSSWFRKSRFKKGKGKNLNIGGC
GLGYKERPGLPVHNDEPITAVALEKSHGPATDRLASLKQAFRAQYNQFTASTDHSWEQTL
TSIQPGVNAPAAHASPTESNSNPSSEQKPERVRKSGKRSRWE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggccggtctggagcagcaggctgccaaagacctggttgcgagcaaggaaaacgccgct
agcgggaagggggacagcggtcgcggcaccaggggcgatatcgacgagatggacgatgaa
gagagttattataagtatatggaagaaaatcccttaaataacggtgatgacgcgtccgac
gtggaggtggaatacgatgaggacggtaatcctatagcgcctccaaagaacaagatcata
gacccactcccgcctatagaccactctcagatacagtacgagccttttgagaagaacttc
tacacgccgcatgaggaaatagaaaagctgacgccgcagcaggttgaggagttgaagaag
aatttgggtgttaagatcacgggcccagaccctccgaagccggtgtccagcttcgcgcat
ctgggtttcgatgagcagctgatgaaggcgatccgccgctcggagtacacgcagcccacg
cccgtgcaggccgccggcgtgcccgctgcactgtccggaagagatcttataggtatcgcg
cgtaccggttcgggtaagacgtgcgcgttcctgtggccgctactcatccacatcatggat
cagaaggagctggctcctggcgacggacctatcggactcatactggcgcccaccagggag
ttggcgcaacagatatacatggaggcgaagaggttcggcaaagtgtacaacatccgttgc
gtgtgttgttacggcggaggttctaagtgggaacagtgcaaggctctcgagggcggcggc
gctgagatcatagtgggcactcctggcagagtgatagacctcatcatgcaaggcnngacc
aacttgcagagggtcacgtatttagtgcttgatgaagctgataggatgtttgacatggga
tttgaggctcaggtgcgttcgatctgcgcgcacgtgcgtccggagcggcaggcgctgctg
ttctccgccacgttcccgcgccgcgtcgagcgcctcgcccgcgacgcgctgcgcgacccc
gtgcgcgtcgcacacggcaccggcggcgccaccgacctcgtcactcaacacgtgcgaata
ttctacaaacccgaggagaagtgggcatggctactcagcaacttggtggaatttctgtcg
gctggcagcgtgttaatatttgttaccaagaagttagaagctgaacagactgcggcgaac
ctcggcgtgcaacagtacgacgcgctgttactgcacggagacatggagcaggccgacagg
aacaaggtgatcacagcgtttaaacgacaggagaacaccatactagtcgctactgacgtg
gcagcgcgcggtctggatatcccgcacgtgcgcacggtggtgaattacacggtggcgcgc
gatatcgacacccacacccatcgtgtggggcgaacgggacgcgctggcgtgcggggggtg
gcccacacgctgctcgctgctgacaaggatcgtgacttcgccggacacctcgtcaggcat
ctcgaggctgcgcaacaggaagtacctgaagagttgatgcacctggcgatgcagtcgtcg
tggttccgcaagtcgcggttcaaaaagggcaagggaaagaatctaaacatcggcggatgt
ggattagggtacaaagagcgtcccggcttacccgtgcacaacgacgagccgatcacagcc
gtggcgcttgagaagagccacgggcccgccaccgaccgcctcgcatcactcaaacaggcc
ttcagggctcagtacaatcagttcacggcgtcaacagaccactcgtgggagcagacgttg
acgtcgatccagcccggcgtcaacgcgcctgccgctcacgcttcacccactgagtcgaac
tccaaccccagctccgaacagaagcccgaacgcgttcgcaagagcggcaagcggagccga
tgggagtag
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