Manduca sexta (tobacco hornworm): 119190600
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Entry
119190600 CDS
T07401
Name
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119190600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
119190600
03041 Spliceosome [BR:
msex03041
]
119190600
03009 Ribosome biogenesis [BR:
msex03009
]
119190600
03016 Transfer RNA biogenesis [BR:
msex03016
]
119190600
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119190600
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119190600
Spliceosome [BR:
msex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119190600
Complex C
U4/U6.U5 tri-SnRNP related factors
119190600
Ribosome biogenesis [BR:
msex03009
]
Eukaryotic type
Pre-60S particles
Helicases
119190600
Transfer RNA biogenesis [BR:
msex03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119190600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
119190600
NCBI-ProteinID:
XP_037298748
LinkDB
All DBs
Position
25:12080630..12089190
Genome browser
AA seq
1030 aa
AA seq
DB search
MADINNLFDCFEAEGNEAAIQLPNINSADESQPKEQLTPASNKRHHEEVEYADTTVTKKP
KENDEEEDILGDINLDLLHSRIVIHTLEAHEGCTHEVAIPPKHDYAPLAPLTSEPAKQYS
FILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQ
KYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEVMREVGWVVFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHAQPCHVVYTEYRPTPLQ
HYIFPAGGDGIHLVVDEQGTFKEDNFNTAMAVLSNAGDAAKGDQRGRRGGPRDKNQTNIF
NIVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEED
RKLPQVENVVPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPART
VVFTSCQKFDGKEFRFISSGEYIQMSGRAGRRGLDDKGIVILMIDEKVTPTVVKGMVQGK
ADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKLKAKQKEYDAL
TVEHEDSIATYCSIRSQLDLLGNQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYDWGIIV
NFRQKTKAGKGKKEENPLTSDPVIVVDILLHVKKATDKDTEVNVPCPPGEAGDVEVVPVI
HTLIYQISSLRVYYPKDLRPSDSRKSVLKTIGEVKKRFPDGPPQLNPIKDMKIGDPVFKE
CVDRIQILEERLYAHPLHKRQKPKRTHSRYERKQELHKDLVNATAELKKAKSVLQMDELK
KRKRVLRRLGYCTASDVIEIKGRIACELSSADELLLTELIFNGVFKSLSSEQSAALVSCF
VCDENSTQASASGDELRGVLRQLQEYARRIAKVSIDAKMDLDEDEYVNKFKCTLMDVVLA
WAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKLLKR
DIVFAASLYM
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcagatataaataatttattcgattgctttgaggcagaaggaaatgaggctgctata
cagctccctaatattaacagcgcagacgagtcgcaaccgaaggaacagctaacgccagct
tctaataaacgtcaccacgaggaggtcgaatatgcggatacgactgtaacaaaaaaacct
aaggaaaacgacgaagaggaggatatattaggagatataaatctagatctcctacactcc
cgtattgtaattcacacattagaagcacacgaggggtgcacgcacgaggttgcgatacct
cccaaacatgactatgctcctcttgctcctctcacatctgagccagctaaacagtacagt
ttcatattagatccatttcagaaagaagccatattatgtatagacaacttgcaatcagtc
ttggtgtctgctcatacttcagcgggaaaaactgttgtagcagaatatgcaatagcactc
tcactgaagaacaaacaaagagttatatacacaacacctataaaagccttgtcaaatcaa
aaatacagagagttctctgaggaatttcatgatgttggtcttatcactggagatgtaacc
ataaatccttcagcgtcatgtcttatcatgaccacagagattttacgaaacatgttgtac
agaggttcagaagttatgcgagaagtggggtgggtggtatttgacgaaattcactacatg
agggacaaagagagaggcgtcgtttgggaagaaacattaattctcctaccagacaatgtc
cactatgtgttcttgtcagctacaataccgaatgcgcgtcaatttgctgagtgggtgtgt
cgcctgcacgcacagccatgtcacgttgtgtacacagagtacagacctactccattacag
cactatatattcccggctggaggagatggcatacatttagttgttgatgagcagggtaca
ttcaaagaagacaactttaacacagcaatggcggtgttaagtaatgctggagacgcggct
aaaggcgaccagcgtggtcgtcgcggtggcccgcgcgataagaaccagactaacatattc
aacatagtcaaaatgatcatggagaggaatttcgcgcccgtcataatattcagtttcagc
aaaaaggactgcgagttgtacgcaatgcaaatggcgaagcttgactttaatacaattgag
gagaagaaattggtagatgaagtgtttaataacgcaatggatgttctctctgaggaggac
cgcaagcttcctcaagtagagaatgtggtaccactgctgcgccgcggtatcggcatacat
catggcggactgctgcccatattgaaggaaactattgaaatattgttcggcttgggactt
atcaaggccctattcgcgacggagacattcgctatgggtttgaacatgccggcccgtact
gtagtgttcacaagttgtcagaagtttgatggaaaagaatttagatttatatcatcaggg
gagtacatccagatgtcaggtagagccgggcggcgtggtctcgatgacaagggcatcgtg
atactgatgatagacgagaaggtcacgcccaccgtggtcaagggcatggtgcagggcaaa
gcagaccctatcaactccgcctttcatctaacttataacatggtactgaatttgttacga
gttgaagagattaatccagaatacatgttggagaggagtttcttccagttccagaatcag
gctgcgattccagatctcattgacaagttaaaagcaaaacagaaggaatacgacgcactg
actgtggagcatgaggactcgatagccacatactgcagcatccgatcgcagctggacctg
ctcggcaatcagttcaggtcgttcatcaccaagccggaatatttgaaacctttcctccaa
cctggacgacttgttaaggtgaaaacagagaaatacgaatacgactggggtataatagtg
aacttcagacagaaaaccaaagcgggcaaaggtaaaaaggaggagaacccgttgacttct
gacccggtgattgtggtagacattctgttgcacgtcaagaaagccacggacaaagacact
gaggtcaatgtgccgtgtccgcctggcgaggcgggcgacgtggaagtagtgccagtgatt
cacacgctcatctatcaaataagttctctacgcgtgtactatcctaaggacttgcggccc
tcggacagtcgcaagtcggtactgaagaccattggcgaagtgaagaaacgattccccgac
ggaccaccgcagttgaacccgataaaagatatgaaaatcggcgacccagtgttcaaagaa
tgtgttgatagaatacagatattggaggagagattatacgcacatccgttacacaaaaga
caaaaaccgaagcgcactcacagccgctacgagaggaaacaagagctccacaaggatctc
gtcaatgccacagctgaactgaagaaggcaaagagcgtgctgcagatggacgagttgaag
aagaggaaacgagtgttgcgtcggctcggatactgcaccgccagtgatgttatcgagatt
aagggacggatagcctgcgagttaagcagcgccgacgagctgctgctgacggagctgatc
ttcaacggcgtgttcaagtcgctgagctcggagcagagcgcggcgctggtgagctgcttc
gtgtgcgacgagaactccacgcaggcgagcgcctcaggcgacgagctgcgcggcgtgctg
cgccagctgcaggaatacgctcgtcgaatagccaaagtttctattgacgcgaaaatggat
ctagacgaggacgagtacgtgaacaagttcaagtgcacgctgatggacgtggtgctggcg
tgggccaagggcgcgtccttcctgcagatctgcaagatgaccgatgtgtttgaaggctca
ataatcagatgcatgcgacgacttgaggaggttctacgacaactttgccaagcggcgaag
aatattggaaacacggacttggagaacaaattcagtgacgccatcaaactgttgaagaga
gacatcgtgttcgccgccagtctttacatgtga
DBGET
integrated database retrieval system
