Manduca sexta (tobacco hornworm): 119191545
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Entry
119191545 CDS
T07401
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03013
Nucleocytoplasmic transport
msex03015
mRNA surveillance pathway
msex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119191545
09122 Translation
03013 Nucleocytoplasmic transport
119191545
03015 mRNA surveillance pathway
119191545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
119191545
03041 Spliceosome [BR:
msex03041
]
119191545
Enzymes [BR:
msex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119191545
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119191545
Spliceosome [BR:
msex03041
]
Complex C
Other components
EJC/TREX
119191545
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119191545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119191545
NCBI-ProteinID:
XP_037301331
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMSGVKVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRSMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgatgatctcctcgactacgaagatgaagagcaagcagatcaacagaca
gccgatggggcgacagaagcggcgccaaagaaagaggttaagggctcttacgtatcaata
cacagttctggcttcagagatttcctactaaaaccagaaatattacgagcaattgtcgat
tgcggttttgagcacccttcagaagtacagcatgaatgtataccacaagcagtattgggt
atggacatcctgtgccaagccaagtctggtatgggtaagacggcggtgtttgtgttggcg
acgctacagcagctagaaccttcggagaaccatgtctacgtgctcgtcatgtgccacaca
agagagctggcttttcaaatcagcaaggaatacgaaagattctccaaatacatgtcagga
gtgaaagtgtcggtgtttttcggcggaatgcccatacagaaagacgaggaggtcctcaag
acggcgtgcccacacatcgtggttggtacaccgggcagaattctggcgttagtcaacagt
aagaagcttaacctgaagcatttaaagcacttcatactggacgagtgcgacaagatgctg
gagtcgctggacatgcggcgtgacgtgcaggagatatttaggaacacgccacacggcaag
caggtgatgatgttctccgccacgctcagcaaggagatcagacccgtctgcaaaaagttc
atgcaggaccccatggaggtttacgttgacgacgaggccaagctgacgctgcatggcttg
cagcaacattatgtgaagctcaaagaaaatgagaaaaacaagaagctgtttgaacttctc
gatgtgctggagtttaaccaagtagtaatatttgttaagtctgtacaacgctgcatagct
ttagcacaactattgactgaccagaacttccctgcaataggaatacatagatctatgact
caggatgaacgtctgtctcgctaccagcagttcaaggacttccagaagaggatattggtg
gctacaaacttgtttggccgaggcatggacattgagcgagtgaacatcgttttcaactat
gacatgcctgaggattctgacacttacctgcatcgcgtcgcccgtgccggtcgctttggt
actaaaggtctggccataacaatggtgtcagacgaaaatgacgccaaaatcctgaacgag
gtccaagaccgttttgatgttaacatcacggagctccccgaagagattgaattatctaca
tacattgaaggccgatag
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