Microbacterium schleiferi: IT882_05760
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Entry
IT882_05760 CDS
T07058
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msf
Microbacterium schleiferi
Pathway
msf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT882_05760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msf03019
]
IT882_05760
03009 Ribosome biogenesis [BR:
msf03009
]
IT882_05760
Enzymes [BR:
msf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IT882_05760
Messenger RNA biogenesis [BR:
msf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IT882_05760
Ribosome biogenesis [BR:
msf03009
]
Prokaryotic type
rRNA helicases
IT882_05760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
QPE05520
UniProt:
A0A7S8N047
LinkDB
All DBs
Position
complement(1214477..1216219)
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AA seq
580 aa
AA seq
DB search
MASSLDNATDEAEPLASEPTFADLGLDDAVMKALKDVGYETPSAIQAATIPPLLAGRDVV
GLAQTGTGKTAAFALPILSRLDLSQKTPQALVLAPTRELALQVCEAFEKYASHLRGVHVL
PVYGGQGYGQQLSALRRGVHIVVGTPGRIMDHLEKRTLDLSELKYLVLDEADEMLTMGFA
EDVETILADTPATKQVALFSATMPAQIRRISAQYLNDPDEITVKTKTTTSANITQRYLMV
SYPQKVDALTRILEVENFEGMIVFTRTKNETETLAEKLRARGYTAAAISGDVAQAQRERT
VNQLKSGKLDILVATDVAARGLDVDRISHVVNYDLPIDTESYVHRVGRTGRAGRTGAAIS
FVTPRERRMLTSIEKATRQPLTEMKLPSVDDVNATRLTRFDDAITAALADPAQIGIFRDI
IAHYVEHHDVPEADVAAALAVVAQGDTPLLLEPDAAPEQRFSRDEQDRSGRGGRERNGRS
DRGPRGGGGPRTTYRISVGRRQKVEPRQIVGALANEGGLRREDFGAIQIRPDFSLVELPA
DLPRDTLKRLENTRISGRLIELKPDRFGNSAKREGRPPRR
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttccctcgataacgcgaccgacgaggccgagcccctcgcatccgagcccacc
tttgccgacctcggtctcgacgacgcggtcatgaaggcgctgaaggatgtcggctacgag
acgccttccgccatccaagccgcgaccatccctcccctgctggcaggacgcgacgtggtc
gggctcgcccagaccggcaccggaaagaccgcggcgttcgcgctgccgatcctctcccgg
ctcgacctgtcgcagaagaccccgcaggcgctcgtgctcgcacccacccgcgagctggcc
ctgcaggtgtgcgaagcgttcgagaagtatgcgtcgcacctgcgcggtgtgcacgtgctg
cctgtgtacggcggacagggctacggtcagcagctctcggcgctgcgccgcggcgtgcac
atcgtcgtcggcaccccgggccgcatcatggaccacctcgagaagcgcactctcgacctg
tctgagctgaagtacctcgtgctcgacgaggccgacgagatgctcacgatgggcttcgcg
gaggatgtcgagacgatcctcgccgacacgcccgccaccaagcaggtagccctcttctcg
gcgacgatgcccgcgcagatccgccgcatctcggcgcagtatctcaacgatcccgacgag
atcacggtcaagaccaagaccaccacttcggccaacatcacgcagcgctatctgatggtg
tcgtacccacagaaagtcgacgcccttacgcgcatcctcgaagtcgagaacttcgagggc
atgatcgtcttcacgcgcaccaagaacgagaccgagaccctcgctgagaagctgcgcgcc
cgcggatacacggcggccgcgatcagcggcgacgtcgcccaggcgcagcgcgagcgcacg
gtgaaccagctcaagagcggcaagctcgacatccttgtcgccacggatgtcgcggcccgc
ggcctcgacgtcgaccgcatcagccacgtcgtcaactacgacctgccgatcgacaccgag
tcgtatgtccaccgcgtcggacgcacgggacgcgccggtcgcacgggagctgcgatcagc
ttcgtgacgcctcgcgaacgtcggatgctgacctcgatcgagaaagccacgcggcagccg
ctgaccgagatgaagctgccgagtgtcgacgatgtcaacgcaacgcgactcacgcgattc
gatgacgccatcacggcggcgctcgcggacccggcgcagatcgggatcttccgcgacatc
atcgcgcactacgtcgagcaccacgatgttccggaggcggatgtcgcggcggcgctcgcc
gtcgtcgcacagggcgatacgcctctgctgctcgaaccggatgcagcacccgagcagcgg
ttctcacgtgatgagcaggatcggtccgggcgcggcggacgtgagcgcaacggacgctcc
gatcgcggcccccgtggcggaggcggaccgcgaacgacctaccgaatctccgtcggccgg
cgccagaaggttgagccgcgccagatcgtcggagccctagccaacgaggggggccttcgc
cgcgaggacttcggcgcaatccagatccgcccggacttctcactcgtcgagctgcccgcg
gatctcccgcgcgacacgctgaagcgcctcgagaacacccgcatcagcggcaggctcatc
gaactcaagcccgaccgcttcggcaactcggctaagcgcgagggccgcccgccgcgccgt
tga
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