Microbacterium schleiferi: IT882_08500
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Entry
IT882_08500 CDS
T07058
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msf
Microbacterium schleiferi
Pathway
msf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT882_08500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msf03019
]
IT882_08500
03009 Ribosome biogenesis [BR:
msf03009
]
IT882_08500
Enzymes [BR:
msf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IT882_08500
Messenger RNA biogenesis [BR:
msf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IT882_08500
Ribosome biogenesis [BR:
msf03009
]
Prokaryotic type
rRNA processing factors
IT882_08500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QPE06014
UniProt:
A0A7S8MZG9
LinkDB
All DBs
Position
complement(1780099..1782429)
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AA seq
776 aa
AA seq
DB search
MIEAEPASTAEPASAGDAGEAVDADAVVDASAAAEETASDPDAVADAPEADSTPASDSGP
EAEPDAVPEAGAASDDQASTDQESTAQASATEEPAGPPTAVSLGLLPENFVSAVSTALMF
YAPEVAPLPALPDEEPEEAEPAGSSRRRNRRRGGGEAREDNRSSGPRQRQAEVITEPQRI
KGSTRLEAKKQRRRDGREAGRRRTVVTEAEFLARREAVDRVMVVRSKNGRVQIGVLEDNV
LVEHYVARSQDASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVDWDSVETGNQ
PRRIELALKSGDKVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGAMNGISRKLPDTE
RARLKKILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTAQWEHINRQVETTGAPALLH
SEPDLLVKIVRDVFNEDFSRMLIQGEDALHTISRYLEGVAPDLLDRVTAYEGDGDPFDDF
RITEQIEKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFVGSGGNLEETVTKNNLEAAE
EIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMT
RKKLGLGLLETFSEPCEVCAGRGVIVHHDPVVKHRTSTSGNGSQRRTRGAAAGSAPSSSS
QSGNGTHVITEGVKSALAQIAASTIHAPVDAAAVEEVVVAAVQEASEPAPEKPKRRKKKA
EPDKPKSEKELLLDSVLNALPEPKAPGQGRGRRRVTTAALTGTPVSANPTSSDDES
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgaggccgagcccgccagcacagccgagcccgccagcgcgggcgacgcaggcgag
gcagtcgacgcggatgccgtggtcgatgccagcgccgctgcggaagagacagcgtccgat
ccggacgctgtcgcggacgcccccgaagctgactccacccccgcttctgactccggcccc
gaagctgagcccgacgccgtgcccgaggccggtgcggcatccgatgaccaggcgtctacc
gaccaggagtcgaccgcccaggcgagtgcgaccgaagagccggcgggtccgccgaccgcg
gtgagcctggggctgctgccggagaactttgtctcagcggtctcgacggccctgatgttc
tacgctcccgaggtcgcgcctctgccggcgctccccgatgaggagccggaagaggctgag
cccgctggctcttcacgacgccgcaaccgtcggcgcggtgggggagaagcgcgcgaagac
aatcggtcgagcggtccgaggcagcgtcaggccgaagtcatcaccgagccccagcggatc
aaggggtccacgcggctcgaggcgaagaaacagcgacgccgggacggccgcgaagcgggc
cgccggcgcaccgtggtgaccgaagccgagttcctggcgcgtcgcgaagccgtcgatcgc
gtcatggtggtgcggtcgaagaacggtcgcgtccagatcggcgtcctcgaggacaacgtg
ctcgtcgagcactacgtggcacgcagtcaggatgcctcgctcatcggcaacgtctatctc
gggcgcgttcagaacgtgctcccgagcatggaagcagcgttcgtcgacatcggtcgtggg
cgtaacgcggtgctgtattcgggcgaggtggattgggactcggtcgagaccggcaaccag
ccgcggcgcatcgagctcgcgttgaagtccggcgacaaggtgctcgtccaggtgacgaag
gaccccgtcgggcacaagggcgctcgcctgacgagccagatctcgcttcccggccgctac
ctggtctatgttcccggtggcgcgatgaacggcatctcacgcaagctgcccgacaccgag
cgcgcacgactgaagaagatcctcaaggaagtcctgcccgagtcatccggtgtcatcgtt
cgcaccgcggccgagggggcgaccgaagaccagctcacgcgcgacgttcagcgactgacc
gcacagtgggagcacatcaatcgacaggtagagaccaccggcgctcccgcgctgcttcac
tccgagcctgatctgctggtgaagatcgtccgcgatgtcttcaacgaggacttctcccgc
atgctcatccagggtgaggacgcgctccacaccatctctcggtacctggagggggtcgcg
cccgatctgcttgaccgtgtcacggcctacgagggcgacggcgatccgttcgatgacttc
cggatcacggagcagatcgagaaggcgctcgaccggaaggtgtggcttccctcgggtgga
tcgcttgtcatcgaccgcaccgaggcgatgacggtcatcgacgtcaacacggggaagttc
gtcggctccggcggcaacctcgaggagaccgtcaccaagaacaacctcgaagccgcggaa
gagattgttcgccagcttcggctccgcgacatcggcggcatcatcgtcgtcgacttcatc
gacatggtgctcgagtccaaccgagacctggtcctgcgccgattggtcgagtgcctcagt
cgtgatcggacgaagcaccaggtcgccgaggtgacctcgctcggtctggtgcagatgacc
cgcaagaagctcggactggggctgctggagactttcagtgagccctgcgaggtctgtgca
ggccgcggggtcatcgtgcaccacgatccggtcgtcaagcaccggacgtcaacgtcgggc
aacggctcacagcgccgtacccggggggcggccgctggcagtgcgccgtcgtcgtcctcc
cagagtggcaacggaacgcacgtcatcaccgagggtgtgaagtccgcactggcgcagatc
gcggcatccaccattcacgctcccgtggatgcggcggccgtcgaagaggttgttgtggcg
gcggtgcaagaggccagcgagccggcacccgagaagcccaagcggcggaagaagaaggct
gaacccgacaagcccaagtccgagaaggaactgctcttggattcggtactcaacgccctg
cctgagccgaaggctcccggccaggggcgagggcgacgccgagtgacgaccgctgcgctg
accggtaccccggtgtctgcgaatccgaccagctcggacgacgagtcctga
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