Microbacterium schleiferi: IT882_11530
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Entry
IT882_11530 CDS
T07058
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msf
Microbacterium schleiferi
Brite
KEGG Orthology (KO) [BR:
msf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msf03016
]
IT882_11530
Enzymes [BR:
msf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IT882_11530
Transfer RNA biogenesis [BR:
msf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IT882_11530
Prokaryotic type
tRNA splicing ligases
IT882_11530
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QPE03882
UniProt:
A0A7S8MVC4
LinkDB
All DBs
Position
complement(2385735..2386904)
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AA seq
389 aa
AA seq
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MEKLTDRLLSWASLIDEKTIDQARTSSRMPFIYPHIALMPDAHLGLGATVGSVIPTLGAI
MPAAVGVDIGCGMIAVKTQFTRADLAGRDLAELRGQIERAIPLSAGHDNRKIVASAEPRV
AELEEAAQAAEFDPASYAAHWRLQLGSLGSGNHFIEVSADEADVVWMFLHSGSRGVGNKI
AQHHIKVAQRLAKQWWIDLPDPDLAYLVEGTPEFTRYIRELRWAQRFALLNREEMMDRVA
NQLGRFLGETVQEQERINCHHNFTESEMHFGKRVWVSRKGAIQADAGRAGLIPGSMGTAS
YVVVGKGNPVALHSSPHGAGREYSRSAARRTFTHDQLREAMVGIEYRDTNAFIDEIPQAY
KPIDRVMADAADLVEVRHTLRQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctcaccgacagacttctgtcgtgggcgagcctgatcgatgagaagaccatc
gatcaggcgcgcacctcatcacggatgccgttcatctacccgcacatcgccctgatgccc
gacgcccacctgggcctcggtgccacggtcggctcggtcatcccgacactcggcgccatc
atgcccgccgcggtcggggtcgacatcgggtgcgggatgatcgctgtcaagacgcagttc
acgcgcgctgaccttgcgggacgcgatctcgcggagttgcgggggcagatcgagcgagcg
atcccgctgtcggcagggcatgacaaccggaagatcgtcgcgagcgctgagccgcgggtg
gcggagctcgaggaagccgcgcaggctgccgagtttgacccggcgtcgtacgcggcgcac
tggcgcctgcagctcgggtcactgggcagtggcaaccacttcattgaggtctcggccgac
gaagccgacgtggtgtggatgttcctgcactcggggtcgcggggagtgggtaacaagatc
gctcagcaccacatcaaggtcgcccagcggttggcgaagcagtggtggatcgatctgccc
gacccggatcttgcctacctcgtcgagggcacgcccgaattcacccggtacatccgggaa
ctgcggtgggcgcagaggttcgcgctgctgaacagagaagagatgatggaccgcgtcgcg
aatcagcttggtcggttcctcggcgaaacggtgcaggagcaggagcggatcaactgccac
cacaacttcaccgagtcggagatgcacttcggcaagcgggtctgggtttcccggaagggt
gcgatccaggccgacgcgggacgcgcaggtctcattcccggatccatgggaaccgcgtcg
tacgtcgtggtcggcaagggcaatccggtggcgctgcactcttctccgcatggcgcgggc
cgcgagtactcgcggtcggcggcgcggagaaccttcacccacgaccagttgcgtgaggcg
atggtcggcatcgagtaccgggacacgaatgccttcatcgacgagattccgcaggcgtac
aagccgatcgatcgggtcatggcggatgccgcggatctggtcgaggtgaggcatacgctg
cgtcagctcgtgaacgtgaagggcgactga
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