Mycolicibacterium smegmatis MC2 155: MSMEI_5392
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Entry
MSMEI_5392 CDS
T02191
Name
(GenBank) DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
msg
Mycolicibacterium smegmatis MC2 155
Pathway
msg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSMEI_5392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msg03400
]
MSMEI_5392
Enzymes [BR:
msg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MSMEI_5392
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MSMEI_5392
DNA repair and recombination proteins [BR:
msg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MSMEI_5392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
DUF7577
Motif
Other DBs
NCBI-ProteinID:
AFP41833
UniProt:
I7FSK9
LinkDB
All DBs
Position
complement(5635852..5636718)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALADHLRRHAVGRVVSRVDVSALSVLKTFDPPVAALHGSTVTAAHRWGKYLG
MEVESGGAPLHLITHLSRAGWLRWSDKLAPTPLKPGKGPIALRVHLGDSQGFDLTEAGTQ
KRLAVWVVRDPMDVPQIASLGPDALSLDSTALAGVLAGNSGRIKTVITDQKVMAGIGNAY
SDEILHVAKLSPFTTAGKLTDAQLGALHDAMITVLTDAVSRSVGQQAATLKGEKRSGLRV
HARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaggtcgaggcactggccgatcacctgcgccggcacgcggtcggc
cgggtggtgtcacgcgtcgacgtgtccgcgttgtcggtgctcaagacgttcgatccgccg
gtcgcggcgctgcacggcagcaccgtcacggcggcccatcgctggggcaagtacctcggt
atggaagtcgaatccggcggcgcgccgctgcacctcatcacgcacctgtcacgcgcgggg
tggctgcggtggtcggacaaactcgcacccacgccgctcaagccggggaaggggccgatc
gccctgcgcgtgcatttgggggactcccagggcttcgacctcaccgaggcgggcacgcag
aagcggctcgcggtgtgggtggtccgcgatccgatggacgtcccgcagatcgcgagtctc
ggtcccgacgcgctgtcgctggattcgacggccctggccggggtgctcgcgggcaactcc
gggcgcatcaagaccgtgatcaccgaccagaaggtgatggcgggcatcggcaacgcctac
agtgacgagatcctgcacgtggccaagctgtcgccgttcacgaccgcgggcaagctcacc
gatgcgcaactcggtgcgctgcacgacgccatgatcacggtgctcaccgatgccgtgagc
cgctcggtggggcagcaggccgcgacgttgaagggcgagaaacgctcgggcctacgggtc
cacgcgcgcaccggcctgccgtgcccggtgtgcggcgacaccgtgcgggaggtctcgttc
gccgacaagtccttccagtactgcccgacctgccagaccggcggtaaggtgctggccgac
cggcggatgtcgcgcctgctcaaatag
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