Mycolicibacterium smegmatis INHR2: LI98_06615
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Entry
LI98_06615 CDS
T03432
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
msh
Mycolicibacterium smegmatis INHR2
Pathway
msh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LI98_06615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msh03400
]
LI98_06615
Enzymes [BR:
msh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LI98_06615
DNA repair and recombination proteins [BR:
msh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LI98_06615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
AIU19818
UniProt:
Q9RPH6
LinkDB
All DBs
Position
complement(1422123..1425374)
Genome browser
AA seq
1083 aa
AA seq
DB search
MKVFDLLGPLPAPNTTTVLEASAGTGKTFALAGLVTRFVAEGVATLDQMLLITFGRAASQ
ELRERVRAQIVAALVALDDPSRACNDLEEYLVKTDQQARRRRLRDALAGFDAATIATTHQ
FCQIVLKSLGVAGDSDAGVTLVESLDDLVSEIVDDLYLAHFGGQKDDPELSYPEALKLAR
VVVGNPATQLRPRDPDPDSPAAVRLKFARDVLAELEIRKRRRGVLGYDDLLTRLADALEP
EDSPARVRMQQRWPIVMVDEFQDTDPVQWQVIERAFSGRSTLVLIGDPKQAIYAFRGGDI
ATYLRAAATAGDKQTLGTNWRSDRALVDRLQAVLRGAQLGGPDIVVHDVQARHQGHRLVG
APRNDPFRLRVVSRKPGNTRVIPIDQLRRHIGRDLAADISALLNSGATWCDQPVQAKDIA
VITETHKDARACHAALLAAGIPAVYTGDSDVFTSEAAEDWLYLLEAFDQPHRPGLVRAAA
ATMFFGETAESLAAGGDALTDRVADTLREWAGHARERGVAAIFEAAQLAGMGKRVLSWQG
GERLMTDLAHMTQLLQDTAHREGFGLAALRDWLRTQRSERGGESERNRRLDSDAAAVQIM
TVWVSKGLQFPVVYLPFAFNRYVPEPDLVLFHDDGQRCLHVGGADPAVARAGRAEAAGDD
SRLTYVALTRAQSQVVAWWAPSYDEPNGGLSRLMRGRAPGEAIVPDKCSPPKISDEDALE
RLRAWEAAGGPVIEESVIGAVSPVPPEPAPEDLAARKFFRAIDMAWKRTSYSGLLRAAET
AGVGVSSEPEVTERDDEFDDIPVVAPAEGADVPSPMAHLPTGAAFGSLVHAVLETADPFA
EDLTAELATHIDAHSQHWPVEVETAELAAALVPMHDTPLGPLAPGLTLRQIGLRDRLCEL
DFEFPMAGGDLRGGRFARLSDVGELLREYLPADDPLAVYAERLSTGILGVQPLRGYLSGS
VDAVLRVGEKFVIVDYKTNWLGTGDGTLTAADYGRRRMVEAMLHSDYPLQALLYAVVLHR
YLGWRLSGYDPATHLGGVLYLFVRGMCGAGTPVVDGHPAGVFSWEPPADLVVALSKLLDA
EAP
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggttttcgatctgctcggcccgctgcccgcaccgaacaccaccacggtgctggag
gccagcgcgggcaccggcaagacgttcgcgctggccggtctggtcactcgttttgtcgcc
gagggcgtcgcgacgctcgaccagatgctgctcatcacgttcggccgcgccgccagccag
gaactgcgcgagcgtgtgcgcgcccagatcgtcgccgcgctcgtcgcgttggacgacccg
tcgcgggcctgcaacgacctggaggaatacctggtcaagaccgaccagcaggcgcggcgc
cggcgcctgcgcgacgcgctggccgggttcgacgccgccaccatcgcgaccacgcaccag
ttctgccagatcgtgctgaaatctcttggcgtggctggggactccgacgccggggtgacc
ctcgtggagagcctcgacgacttggtctccgagatcgtcgacgatctgtatctcgcgcac
ttcggcgggcagaaggacgatcccgagctcagctatcccgaggccctcaagctcgcgcgc
gtcgtcgtcggcaacccggccacccaactgcgcccgcgcgacccggaccccgattccccc
gccgcggtgcgcctgaagttcgcgcgggatgtgctcgccgagttggagatccgcaagcgt
cggcgcggcgtgctcggctacgacgatctgctgacccggctggccgatgcactcgaaccc
gaggactccccggcgcgcgtgcgcatgcagcagcgctggccgatcgtgatggtcgacgag
ttccaggacaccgatcccgtgcagtggcaggtgatcgagcgcgcgttctcggggcggtcg
acgctggtgctcatcggtgatcccaagcaggcgatctacgcgttccgcggtggcgacatc
gcgacgtacctgcgggccgccgcgacggccggtgacaagcagacgctgggcaccaactgg
cgcagcgaccgcgcactggtggaccgcctgcaggccgtgctgcgcggcgcacaactcggc
ggacccgacatcgtggtgcacgacgtgcaggcacgccatcaggggcaccgcctggtgggc
gcaccgcgcaacgacccgttccggctgcgcgtggtgtcacgaaaacccggcaacaccagg
gtgatcccgatcgatcagctgcgccgccacatcggccgggatctcgcggccgacatctct
gccctgctgaacagcggggccacgtggtgcgaccaaccggtccaggcgaaggacatcgcg
gtcatcaccgagacccacaaggacgccagggcgtgtcatgcggcgctgctcgcggcgggc
attcccgcggtctacaccggggattcggatgtgttcacctccgaggccgccgaggactgg
ctgtacctgctcgaggcgttcgaccagccgcaccggccgggtctggtgcgcgccgcggcc
gccaccatgttcttcggcgagaccgcggaaagccttgccgcgggcggcgatgcgctcacc
gaccgggtcgccgacacgctgcgtgaatgggcggggcatgcccgtgagcgcggtgtcgcc
gcgatcttcgaggccgcgcaactcgccggtatgggcaagcgtgtgctgtcgtggcagggc
ggtgaacggttgatgacggatctcgcccacatgacccagttgctgcaggacaccgcacac
cgcgagggcttcgggctggccgcgctgcgcgactggctgcgcacgcagcgctcggagagg
ggcggcgaatcggaacgcaaccgtcgtctcgacagtgacgccgcggccgtgcagatcatg
accgtgtgggtgagcaagggtctgcagttcccggtcgtctacctgccgttcgcgttcaat
cgctatgtgcccgagccggatctggtgttgttccacgacgacgggcagcgctgcctgcat
gtcggcggagccgatccggcggtcgcccgcgcggggcgtgccgaggccgcgggcgacgac
agccgtctcacctacgtcgcactgacccgcgcccagtcgcaggtggtggcgtggtgggca
ccgtcgtacgacgaacccaacggcggcctgtcgcggctgatgcgcggccgcgctcccggg
gaggcgatcgtccccgacaagtgctcaccacccaagatctccgatgaggatgcgctggaa
cggttgcgggcgtgggaggcagccggtgggccggtgatcgaggaatcggtgatcggtgcg
gtcagcccggtgccacccgagcccgcgcccgaggatctggcggctcgcaagttctttcgc
gcgatcgacatggcgtggaagcgcacgtcctattcggggctcttgcgcgcggcagagacc
gcgggtgtcggggtgtcgagcgaacccgaggtcaccgaacgcgacgacgagttcgacgac
attcccgtggtcgccccggccgagggtgccgacgtgccctctcccatggcacacctgccg
acgggcgcggcgttcggttcgctcgtgcacgccgtgctggagaccgccgatccgttcgcc
gaggatctgaccgccgaactcgcgacgcacatcgacgcccactcccagcactggccggtc
gaggtcgagacggccgaactcgcggccgcgctcgtgcccatgcacgacaccccgctgggg
ccgttggcgccgggtctcacgctgcggcagatcggtctacgggaccggttgtgtgagttg
gatttcgagtttcccatggccggtggcgatctgcgtggtggacggttcgcacggttgtcg
gacgtcggtgagctgctgcgtgagtacctgcccgccgacgacccgctggcggtgtacgcc
gagcggttgtccacgggcatcctcggggtgcagccgctgcgcgggtatctgtcggggtcg
gtcgacgcggtgctgcgggtcggcgagaagttcgtcatcgtcgactacaagacgaactgg
ctgggcaccggcgacggcacgttgaccgcggccgactacgggcgccgccgcatggtcgag
gccatgttgcattccgactatccgctgcaggccctgctgtatgcggttgtgctgcaccgg
tacctgggctggcggctgtcgggctacgacccggcgacgcatctcggtggtgtgctgtat
ctgttcgtacgtggcatgtgcggggccgggacgccggtcgtcgacgggcacccagccggg
gtgttcagctgggaaccgcctgccgatctggtcgtcgcattgtcgaagctgttggatgcg
gaggcgccgtga
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