Mycolicibacterium smegmatis INHR2: LI98_06620
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Entry
LI98_06620 CDS
T03432
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
msh
Mycolicibacterium smegmatis INHR2
Pathway
msh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LI98_06620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msh03400
]
LI98_06620
Enzymes [BR:
msh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LI98_06620
DNA repair and recombination proteins [BR:
msh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LI98_06620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AIU19819
UniProt:
Q9RPH7
LinkDB
All DBs
Position
complement(1425371..1428628)
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AA seq
1085 aa
AA seq
DB search
MALHLHRAERTDLLADGLAALLSDPLPDPFATELVLVPAKGVERWLSQRLSNRLGVCAAV
EFRNPRSLIAELTGTADDDPWSPDAMVWPLLGVIDESLDEPWCATLATHLGHFEMGEEYE
LRQGRRYAVARRLAGLFASYARQRPQLLVDWDGLPDDLAWQKALWQALCERIDADPPHIR
HAKTLVQLHESPTDLPQRLSLFGHTRLPATEVELLTALATHHDLHLWLPHPSDTLWQALS
TRKGPLPRREDTSHRDVGHPLLATLGRDLREMQRLLPEPDTDEFRGRSEYPDTLLGWLQS
DIAADAVRPQGRHHRREDRSIQVHSCHGPSRQIDVLREVLLGLLADDPTLEPRDILVMCP
DIETYAPLITAGFGLGDVVPRTRGAHINLSAHPAHKLRVRLADRALVQTNPLLAVAAQLL
ALAGGRATASEVLNLAESAPVRARFGFTDDDLDAITAWTREANIRWGFDQEHRRPYGVEF
LHNTWRFGIDRVLAGVAMSDDSHAWLGTTLPLDDVSSNRVELAGRFADFVEKLRRTVDQL
SGTRPLHEWLDALTAGIDALALADEDWPAAQMQREFAEITARAGDTATSLRLADVRALLD
RHLAGRPTRANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLGAVDGDDALARDPM
TGERDIRSEDRQLLLDAILAATQTLVITYTGANEYSGQARPPAVPLAELIDTLKITTEDS
ALDVLTRHPLQPFDKRNVIPGALVPDEPFTFDQTALVAARASSGERAMRPAFFSDPLPPP
LPDDVALEDLLNFFKDPVKGFFRALDYTLPWDVEGVSDVMPVDIDALEEWTVGDRMLSDI
LRGMTPAAAQQAEWRRGTLPPGQLGWRRAIALRDQCALLAAEALGFRDTDGQAYDVDIDL
GGGRRLTGTVSPVFGDRLVSVTYSKLGGKHLLQSWIPLLALAAGYPDRDWLAVCIGRPAR
GTTPRVEGLGGPDNPVDLLADLVAIYDAGRREPLPLPVKTSYAWAEARHCGDDPEQKAGF
RWRSGRYPGEDAEPAHVRAWGRDAWLRDLMQPLRPGEEFEGETHRLGAYSSRLWLPLLRA
ERPVR
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcactgcacctgcatcgggccgaacgcaccgatctgctcgctgatggactcgcggcg
ctgctgtcggatcccctgcccgatccgttcgcgaccgaactggtgctggtccctgccaag
ggcgtcgaacgctggctgagccagcggttgtccaaccgtctcggggtgtgcgcggcggtc
gagttccgcaacccgcgctcgctcatcgccgagctcaccggaaccgccgacgacgatccg
tggtcacccgacgcgatggtgtggccgctgctcggcgtgatcgacgagagcctcgacgag
ccgtggtgcgcgacgctcgcgacgcacctcggccacttcgagatgggcgaggagtacgag
ctgcgccagggccgccgctacgcggtcgcgcgacggctggcggggttgttcgcgtcctac
gcgcggcagcgcccgcaactactggtcgactgggacggcctccccgacgacctggcctgg
cagaaagcgctgtggcaggcactgtgtgagcgcatcgacgccgacccgccccacatccgc
cacgccaaaacccttgtccagctacatgagtcgcccacggatctgccgcagcgcctgtcg
ctgttcgggcatacacgcctgcctgccaccgaggtcgaattgctgaccgcgctggccacg
catcacgatctgcacctgtggctgccccaccccagcgacactctctggcaggcactgtcc
acgcgcaagggtccgctgccccgacgtgaggacaccagccaccgtgacgtcgggcatcca
ctgctggccaccctgggccgcgacctgcgcgagatgcaacgtctgctgcccgagcccgac
accgacgaattccgcggcaggtccgagtatcccgacacgctgctgggctggctgcagtcc
gacatcgcggccgacgcggtacgcccgcagggccgtcaccaccgtcgcgaggaccgctcg
atccaggtgcacagctgccacggcccgtcacggcagatcgatgtgctgcgcgaggtgctg
ctcggcctgctcgccgacgatcccacgctggaaccccgcgacatcctcgtcatgtgtccc
gacatcgagacctacgcgccgttgatcacggccgggttcgggctcggcgacgtcgtgccg
cgcacgcgaggagcacatataaatctcagcgcgcatcccgcgcacaagctgcgggtgcgg
ctggccgaccgcgcgctggtgcagaccaatcccctgctggcggtggccgcgcaactgctg
gcgctggccggcggccgcgcgaccgcgagcgaggtgctcaacctggccgaatccgcgccg
gtgcgggcccggttcggattcaccgacgacgacctcgacgcgatcacggcgtggacgcgc
gaggccaacatccgctggggtttcgaccaggagcaccgccgcccgtacggcgtcgaattc
ctgcacaacacctggcgtttcggcatcgaccgcgtgctggccggggtcgccatgtccgac
gactcgcatgcctggctgggcacgacgctgccgctcgacgacgtcagcagcaaccgcgtg
gagttggcgggccggttcgccgatttcgtcgagaagctccgccgcacggtcgatcagctc
agcggcacccgcccgctgcacgagtggctcgacgcgctgaccgcgggcatcgacgcgctg
gcactggccgacgaggactggcccgccgcccagatgcagcgtgagttcgccgagatcacc
gcacgtgcgggcgacaccgcaacctcgttgcggctggcggatgttcgcgcactgctggac
cgccatctggccgggcgccccacgcgggccaacttccgcaccggaacgctcacggtgtgc
accatggtgccgatgcgttcggtgccgcaccgcgtggtgtgcctcgtgggtctcgacgac
ggcgtgttcccgcgtctgggggcggtcgacggcgacgacgccctcgcgcgcgacccgatg
accggtgagcgtgacattcgttcggaggatcgccaactgctgctcgacgcgatcctcgcg
gccacgcagacgctcgtcatcacctacaccggcgccaacgaatactcggggcaggcccgc
ccgcccgcggtcccgctggccgagctgatcgacacgctcaagatcaccaccgaagattcc
gcactcgacgtcctcacgcggcatccgttgcagcccttcgacaaacgcaacgtgatccct
ggcgcgctggtgccggacgagccgttcacgttcgaccagaccgcgctcgtcgcggcacgg
gccagcagtggtgaacgcgccatgcggccggcgttcttcagcgatccgttgccgccgccg
ctgcccgacgacgtcgccctcgaagacctgctgaacttcttcaaggatcccgtcaagggg
ttcttccgcgcgctcgactacacgctgccatgggacgtcgagggcgtgtccgacgtgatg
cccgtcgacatcgacgcactcgaggaatggacggtcggcgaccgcatgctgtcggacatc
ctgcgcggcatgaccccggccgccgcgcaacaggccgagtggcgccgtggcacgctgccg
cccggacagttgggatggcgccgcgcgatcgcactgcgcgaccagtgcgcgctgctggcc
gccgaggcgctggggttccgcgacaccgacggtcaggcctacgacgtcgacatcgacctg
ggcggtggccggcgtctcaccggcacggtgtcaccggtgttcggtgaccgactggtgtcg
gtgacgtactccaagctgggcggcaagcacttgctgcagtcgtggattccgttgctggcg
ttggccgccggatatcccgaccgcgactggctcgcggtgtgcatcgggcggcccgcgcgg
ggcaccacaccgcgggtcgaggggctgggcgggcccgacaacccggtcgatctgctggcg
gatctggtggcgatctacgacgcggggcggcgcgaaccactgccgcttccggtcaagacg
tcgtatgcgtgggccgaggcacggcactgcggcgacgatccggagcagaaggccggcttc
cgctggcgcagcggccgatacccgggcgaggacgccgaacctgcccacgtgcgcgcgtgg
ggccgtgacgcgtggctgcgcgacctcatgcaaccgctgcgccccggtgaggagttcgaa
ggcgaaacccaccggttaggtgcgtactcgtcacggctgtggctgccgctgctgcgcgcc
gaaaggccggtgcggtga
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